Trichormus variabilis: Ava_3085
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Entry
Ava_3085 CDS
T00277
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K03090
RNA polymerase sigma-B factor
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ava03021
]
Ava_3085
Transcription machinery [BR:
ava03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ava_3085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_r4
HTH_23
Sigma70_ECF
HTH_Crp_2
HTH_3
HTH_24
TnsD
LacI
Motif
Other DBs
NCBI-ProteinID:
ABA22694
UniProt:
Q3M8J2
LinkDB
All DBs
Position
complement(3833698..3834483)
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AA seq
261 aa
AA seq
DB search
MAASESSMQTDGMELLRSYHHNPSIKLRNKLVQLHTGLVRKMAHKFSHQCNEPYEDLEQI
GYFGLIRAIERFDPSQGYAFSSFAVPYIRGEMLHFLRDRSTLLKIPRRWQELYNEGQKIR
KELSISLGRPPKDAEIAKHLKVSVQEWQETKLAAQNRMPLSLDATAVHYVDCQITLGEAL
PCPRTIAQQQQDEERQQLQGAISMLEEKPRQAVEMVFLKELSRKDAAKNIGTSPMTVTRY
LQKGIQDLICYLQPQVMPTGS
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaagtgagtcctctatgcaaactgacggtatggagttattgcgctcataccac
cataatccttctattaaacttcgtaacaaactggttcaattacacactggcttagtaaga
aaaatggctcataaatttagccatcaatgtaatgaaccttatgaagatttggaacaaatt
ggttattttggtttaattagagctatagaacgctttgatcctagccaaggatatgctttt
agttcctttgctgtgccatatatcagaggtgaaatgctgcattttctccgcgatcgcagt
acgctattaaaaattcctcgtcgttggcaagaattatataacgaaggacaaaaaatccgt
aaagaattatcaatatctctaggtcgtccaccaaaggatgctgaaattgccaagcacctc
aaggtatctgtgcaagaatggcaagaaactaagttggctgcccaaaatcggatgccttta
agtttagatgctacggcagtacactatgtagattgccaaatcaccttaggtgaagcccta
ccctgtccccgaacaattgcccaacaacaacaagatgaagaacggcaacaactccaaggg
gcaattagtatgctagaagaaaagccccgccaagcagtggaaatggtcttcttgaaagag
ctttctcgcaaagatgctgctaaaaacatcggtactagtcctatgacagtaacgcgatat
ttgcaaaaaggtattcaagatttaatttgttatttacaaccacaagtaatgcctactggt
tcatag
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