Trichormus variabilis: Ava_3331
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Entry
Ava_3331 CDS
T00277
Name
(GenBank) Exonuclease SbcD
KO
K03547
DNA repair protein SbcD/Mre11
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_3331
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ava_3331
Archaeal homologous recombinant proteins
Ava_3331
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
ABA22938
UniProt:
Q3M7U8
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All DBs
Position
4149701..4150939
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AA seq
412 aa
AA seq
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MIKILHLSDIHMGSGFSHGRINSATGLNTRLEDFVNTLSVCIDRALGDAVDLVIFGGDAF
PDATPPPYVQEAFASQFRRLVDAEIPTVLLVGNHDQHSQGQGGASLNIYRTLGVPGFVVG
DRLMTHHIQTRNGKVQVITLPWLTRSTLMTRQETEGLGLAEVNQLLTERLQVVMEGEIRR
LDPDVPTVLLAHLMADNATLGAERYLAVGKGFTLPLSLLTRPCFDYVALGHVHRHQNLNK
SNNPPVIYPGSIERVDFSEEKEDKGYVMIELERGNVEWEFCSLPVRTFRTIEVDVSKADD
PQAAIVKAIAKHDIQDAVVRLIYKLRSEQMDVIDSASLHNALSSAHTYTIQAELLSQLAR
PRIPELSASSSIDPMEALKTYLQNREDLKDISASMLEAAEKLLTDDLVMGNW
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaatcctccatctctccgacatccacatgggaagcggtttttctcacggacgc
attaatagcgccacgggattaaatacgcgattggaggattttgtcaatactttatctgtg
tgtattgatcgggcattgggagatgctgtagatttggtcatatttggtggtgatgcgttt
cctgatgctacgccgccgccctatgtgcaagaagcttttgctagtcaatttcgtcgttta
gtcgatgctgaaattccgacggtgttgttagtggggaaccatgaccaacattcccaagga
caaggaggcgctagtttaaatatttaccgcactttgggagtgccggggtttgtggttggt
gataggttaatgactcatcatatccaaactcgtaacggcaaagtgcaggtgattacttta
ccttggctaactcgttcgacactgatgacgcgtcaagagacggaaggtttggggttggct
gaagtcaatcaactattaacagaacgtctgcaagtggtgatggaaggggaaattcgccgt
cttgaccctgatgtaccaactgtgcttttagctcatttgatggctgataatgcgacgttg
ggggctgaacgctatttagctgtgggtaaaggttttactctacctttatctttgctgact
cgtccctgttttgattatgtggccttgggacacgtccaccgtcatcaaaatttgaataaa
tctaataacccgccagtgatttatccggggagtattgaacgggtagattttagcgaggag
aaagaggataagggttatgtaatgattgaactggaacggggtaatgtggagtgggagttt
tgttccttacccgtccggacttttcgtaccatagaagtggatgtgtcaaaggcagatgat
ccacaagctgctattgtgaaggcgatcgctaaacatgatattcaagatgctgtcgtacgc
ctaatctacaaactccgttccgaacaaatggatgtaattgatagcgcctccctacataac
gccttgagttctgctcatacttacaccattcaagcagaattattaagtcaattggctcga
ccccgcatccctgaattgagtgcgagtagcagcatcgacccaatggaagcattaaaaact
tacttgcagaatcgtgaagacctaaaagacatatcagcatccatgttagaagcagctgaa
aagctactaactgatgatttggtaatgggtaattggtaa
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