Trichormus variabilis: Ava_3361
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Entry
Ava_3361 CDS
T00277
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ava
Trichormus variabilis
Pathway
ava03420
Nucleotide excision repair
ava03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ava_3361
03430 Mismatch repair
Ava_3361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_3361
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ava_3361
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ava_3361
MMR (mismatch excision repair)
Other MMR factors
Ava_3361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
DEAD
AAA_12
Viral_helicase1
AAA_30
ResIII
DUF1978
DUF3553
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
ABA22968
UniProt:
Q3M7R8
LinkDB
All DBs
Position
complement(4181206..4183524)
Genome browser
AA seq
772 aa
AA seq
DB search
MTTDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVAPENILAVT
FTNKAAREMKERIQRLFAEQLALTEHGKRLDLLPEHEQTKLRSRVYKTTIKELWCGTFHS
LFSRILRFDIEKYQDEKGRQWNRNFSIFDESDVQGLIKEIVTKQLNLDDKKFEPRSVRYA
ISNAKNQGLSPQEFEKDQPNYRGRVIADVYNRYQDKLAENNALDFDDLILIPTRLFQQNE
QVLGYWHRKFCHILVDEYQDTNRTQYDLIRLLTTNGEERKSAWEWQNRSVFVVGDADQSI
YSFRMADFTILLEFQNQFGDGLPDEDTRTMVKLEENYRSCENILQVANELIENNTQRIDK
VLKATRGAGEEIYCHKADNELEEADFVIRQIRTLEHQNPELDWGSFAILYRTNAQSRPFE
ELLVRNQIPYTVVGGMKFYDRKEIKDVIAYLRAIANPSDTVSLLRVINTPRRGIGKATID
NLINASQQLGTTLWEILSDETSVNTLAGRSAKGVNHFAQMINRWQEQITTAPVTEIVMGI
LEDSGYVQDLQNQGTDESEDRIQNVQELYNAVLQFQEENEDVSLTAFLQSTALSSDLDNL
KEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSLNDPAALEEERRLCYVGITRAQ
ERLYLSFARERRLYGSREPAMRSQFLDELPAELITTQYQVRQTYTKPPSTTNGKQTANQD
WQVGDRVLHKSFGIGEITHVFGSGSKLSVAVKFTSLGQKIIDPRVAQLQKVD
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgactttctcagtcatctgaatcccagccaacgtcaagccgtggaacactat
tgcggccccttgttagttgttgctggtgctggttccggtaaaacacgagcgctaacttat
cggattgctaatttaatactaaagcaccgcgttgctcccgaaaatattttggcggtgact
ttcaccaacaaagccgccagggagatgaaagaacggattcaacggctgtttgcggaacaa
ttagccttgacagaacacggaaagcgtttagatttattaccagaacacgaacaaactaaa
ttgcgatcgcgcgtttataaaactactattaaagaactgtggtgtggtactttccacagt
ttattttcccgtattctccgctttgatatcgaaaaataccaagatgaaaaagggcgacaa
tggaatcgtaatttttccatttttgatgaatctgatgtacaaggtctcatcaaagaaatc
gtcacgaaacaattaaatctagatgataagaagtttgagccgcgttctgtccgctacgcc
attagtaatgccaaaaatcaaggactttcaccccaggaatttgaaaaagaccagccaaat
tatcgtgggagagtaattgctgatgtctataatcgttatcaagataaactagcagaaaac
aacgctcttgattttgatgatttaatcttaattcctacgagattatttcaacagaatgaa
caagttttaggttactggcatcgcaagttttgtcacattcttgtagacgaatatcaagat
actaaccgcacacaatacgatttaattcgcctgttgacaaccaatggcgaagagagaaaa
agtgcatgggaatggcaaaatcgctcggtttttgttgtcggtgatgcagaccaatctatt
tacagctttagaatggcagatttcaccatcctgctggagtttcagaatcaatttggtgat
ggtttgccagatgaagatacccgcacaatggtgaagttagaagagaactatcgctcatgt
gaaaacattctccaagttgctaacgaactgattgaaaataatactcaaagaattgataaa
gtcctgaaggcgacgcggggagcaggtgaggaaatttactgccacaaggcagataatgaa
ttagaagaagctgattttgtaattcgtcaaatccgcacattagagcatcaaaacccggag
ttagattggggtagctttgcgattttgtatcggacaaatgcccaatctcgtccctttgaa
gaattgttagtcaggaatcagattccttacacagttgtgggtggaatgaagttctatgac
cgcaaagaaattaaagatgtcatagcttatttaagggcgatcgctaatccctcggataca
gttagtctattacgagtgattaacacccctcggcgtggtatcggtaaggcgactattgat
aacttaatcaatgcttcccagcaattaggtacaactctctgggaaattttaagtgatgaa
acatcagtcaacacgttagctgggcgatcggctaaaggggtaaatcactttgcccaaatg
attaaccgttggcaagagcaaataaccacagccccagttacagaaatagttatggggatt
ttagaagattctggttacgtacaagatttacaaaaccaaggaacagacgaatctgaagac
cgcatccaaaacgtacaggaactttacaacgccgtcttacaattccaagaagagaatgaa
gatgtttctttaacagcgtttctacaaagtacagcccttagttccgatttagataacctc
aaggaaggtcaaacagccgtttctctaatgactctgcacgcttccaaaggtttggaattt
cctgtagtcttcttggtaggtttggaacagggattattccccggctaccgttcactaaat
gaccccgcagccttagaagaagaacgccgcctctgttatgtagggattactcgcgcccaa
gaacggttgtatttatccttcgcccgtgaacgccgcttatatggctcacgggaacccgcc
atgcgatcgcaatttctcgacgaactaccagccgaattaatcaccacccaataccaagtc
cgacaaacctatactaaacccccatcaactaccaatggtaagcaaacagcaaatcaagat
tggcaagtaggggacagagttttacacaaaagttttgggattggggaaataacccacgtt
tttggttctggtagcaagctttctgtcgcggttaaatttacgagcttgggtcagaaaatt
attgaccccagagtagcgcaattacaaaaggtggattag
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