Trichormus variabilis: Ava_3418
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Entry
Ava_3418 CDS
T00277
Name
(GenBank) Protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ava03016
]
Ava_3418
Enzymes [BR:
ava01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Ava_3418
Transfer RNA biogenesis [BR:
ava03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Ava_3418
Prokaryotic type
tRNA splicing ligases
Ava_3418
BRITE hierarchy
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GFIT
Motif
Pfam:
RtcB
DUF4514
Pellino_RING
Motif
Other DBs
NCBI-ProteinID:
ABA23025
UniProt:
Q3M7L1
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All DBs
Position
complement(4248022..4249203)
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AA seq
393 aa
AA seq
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MPYEKLEIKTQAPVLSWANHELGSEETKMAKNVASLPFVFKHIALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKTPFTGEHLEGKLKKIRLDIEAAIPTGFNENKEVEKS
VANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEVCLDTENQVWLMLHSGSRNIG
NQLAQCHISTAKELAKLAGNRLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
RFKRIVEKHLAGGKLTKPLLQVNCHHNYAEKEVHFDEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDE
IPGAYKPIDQVMENQADLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaaaagttagaaattaaaacacaagcacctgtattatcttgggcaaatcat
gaactaggttccgaagaaaccaagatggcaaaaaacgtggcatcgctaccatttgtattt
aaacacatagcattaatgcccgatgttcatttaggaaaaggtgctttagttggttctgta
attgccactaaagaagcaatcattcctgcggcggtgggggtagatattggttgcggtatg
agtgcaattaaaacaccatttacaggtgaacatttagaaggaaaactcaagaaaattcgc
ctagatattgaagccgcaattcccacagggtttaatgaaaataaagaagtagaaaaatcg
gtggctaactggcaacgttggcgcgatttttcagacttacattctggtgtccaagactta
caaactaaagccatgagacaaatgggttctctaggcggcgggaatcactttttagaagtt
tgtttggatacagaaaaccaagtttggttaatgttgcactctggttcacggaatattggc
aatcaacttgctcaatgtcatattagtaccgcgaaagaattagcaaaactagcaggtaat
agattacctgatcctgatttggcttatttcatcgctggtacaccagaatttaaagcatac
tggaacgatttacaatgggcgcaagattatgcccgtgttaaccgtgatgtgatgatggcg
cgttttaaacgcattgttgaaaaacatcttgctggtggcaaattaactaaacctttgtta
caggtaaattgtcatcataactatgctgaaaaagaagtacattttgatgaagatgtgtac
gtaactcgtaaaggtgcagtccgcgctcaaacagaagattatggcattattcctggttca
atgggagcaaaatctttcattgttaaaggtaaaggtaatgcccatagtttttgttcttgc
tctcacggtgctggtcgtttattgtcaagaagtaaagccaaaaatgtctatactcttgat
gatttgattgagcaaaccaagggcgtagaatgccgtaaagatactggtgttttagatgaa
attcctggtgcttataaacccattgatcaagtgatggaaaatcaagcagacttggttgaa
gttgtcgctactctcaagcaagttgtttgtgtgaaagggtga
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