KEGG   Trichormus variabilis: Ava_3502
Entry
Ava_3502          CDS       T00277                                 
Name
(GenBank) Type I site-specific deoxyribonuclease HsdR
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ava  Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:ava00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ava02048]
    Ava_3502
Enzymes [BR:ava01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Ava_3502
Prokaryotic defense system [BR:ava02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Ava_3502
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII T1R_D3-like T1RH-like_C DEAD HSDR_N_2 PA28_N DUF445 DUF7307
Other DBs
NCBI-ProteinID: ABA23109
UniProt: Q3M7C7
LinkDB
Position
4342244..4345483
AA seq 1079 aa
MPNFISEDDIEQAVLAKLKQQGFKLLNCFTTNPDDLNDRSNRTDKSEVIFSDRLKAAAIR
LNPNLPAEAIAQGLETLTNKRQLMSPIAANREIDRLIRDGIPIEYENAQGRSEHGKVRLI
DFNDLSHNGNNEYLAVSQLWIKGERNYRRPDILLYINGLPLVFIELKNSNVKLQTAFDDN
LSNYKKDIPQLFLTNAFCILSNALETKIGSFTAEWEHFFNWLRVEDEKEKIDRQQIQESG
TSLELAIDGLCHPSKLLDYIENFILYHKETQKIIAQNHQFIGVNRAIDAFDHREVKQGKL
GVFWHTQGSGKSFSMIFYARKIFRKLTGNFTFVIITDRDDLDGQIYRNFLNTETVKEKEA
ARPKNSKQLREFLSLNKRIVFTLIQKFRYEKGEEYPILSDRNDIIVIVDEAHRTQYKTLA
ENMRAGLPNANYLAFTGTPLLGKKRKTNEWFGDYVSEYNFSQSVDDGATVPLFYQKRVPE
VLIQNEDLSEEFYQILEDENLDDTQQAKLERKFARETEVIKRDDRLETIAKDIVYHFPRR
GYLGKGLVVSLDKFTAVKMYDKVQYHWKAEIKNLVGRIKKSSNDIEKIRLKKILDFMRET
EMAVVISLEGSDSEVEKFAKQGLDIKPHRERMNTVDAQGHDIEYQFKDEENSLRLVFVCA
MWLTGFDAPTLSTLYLDKPMKDHTLMQTIARANRITSYQIHNVTKTNGEIIDYYNVFRNM
KQALADYALGDDGDKEDSPIQEKSNLFELLDDAIAQGLNFCRELGIDLESILKIQETFEK
LGQFNQFADTLLQKDEWRKGFFVYQNTITSLYEACKPEIIKKPRPLVFIFQYLRGVIDSI
IERKDIDHASLKIAELLDESVVADNQGITTKEYSAEYNIIQTGQVWDLSKINFEQLKAEF
SYKPYKNIEITDLRSFIEDKLNKMIQQNTTRTDFAQRLQAIIDKYNAGGSSIDNYYEALV
NFTENLKAEAERHIREGLTEDELELFDLLKKDKMTAEETQKVKLAAQSLLHRLIAEQPKV
LVQDWYKDMQSQRRVQSVVEAVLDQNLPESYDRALFKFKCDTVFDLMYDHASKGSKWAG
NT seq 3240 nt   +upstreamnt  +downstreamnt
atgcctaactttatttctgaagatgacatcgaacaagcggtacttgccaaattaaagcag
caaggctttaaattactcaactgcttcacaaccaaccccgacgatctcaacgacagatcc
aaccgcacagataaaagcgaggtcatttttagcgatcgcctgaaagcagcagcaattcgc
ctcaaccccaacttaccagcagaagcgatcgcccaaggtttagaaactcttaccaataaa
cgccagttgatgtctcccatcgccgcaaatcgggaaatagacaggctaattcgtgatggt
atccccattgaatatgaaaacgcccaaggtagaagcgaacacgggaaagtgcgcttaata
gattttaatgacttgagtcacaacggaaataatgaatatttagccgtttcccaactttgg
attaaaggagaaagaaactatcgccgtcctgatatcttgctatatatcaacggtttaccc
ctggttttcatcgaactaaaaaactccaacgtcaaactgcaaacagcctttgacgacaac
ctcagcaactacaaaaaagatattcctcaactctttctcaccaacgccttctgcattctc
tccaacgccctagaaaccaaaattggcagttttaccgcagagtgggaacacttttttaac
tggttacgggtggaagatgaaaaggaaaaaatagatcgtcagcagattcaagaatctggt
actagcctagaactagctatagatgggctttgtcacccttctaaactactcgactacatc
gaaaactttattctctatcacaaagaaactcagaaaatcatcgcccaaaaccaccagttc
atcggtgtgaatcgcgctattgatgcttttgaccaccgggaagtaaaacagggcaaatta
ggagttttctggcacacacaaggctctggtaaaagcttttcgatgattttttatgcccga
aagattttccgcaagctcacgggcaattttacctttgtgattattaccgaccgcgatgat
ttagatgggcagatttaccgcaatttcttaaacaccgaaacagtcaaagagaaagaagca
gctcgacccaaaaacagtaaacaactccgggagtttctttccctcaacaagcgaatagtt
tttaccctgattcaaaagttccgctacgagaagggggaggagtatcccatattgagcgat
cgcaatgacattattgtaattgtcgatgaagcacaccgcacccagtataaaaccttagcg
gaaaatatgcgggcaggtttacccaatgccaattatctcgccttcacaggtactccccta
ttaggtaaaaagcgcaagactaacgaatggtttggggattatgtcagcgagtataatttt
tctcagtcagtagatgatggcgcaaccgtccccctgttttaccagaagcgagtaccagag
gtactgattcaaaacgaggatttaagcgaggaattttaccaaatccttgaagatgaaaac
cttgatgacacccagcaagccaagctagaaaggaaatttgcccgcgaaaccgaagttatt
aaacgtgatgataggttagagacaatagcaaaagatattgtttaccactttcctcgtcgt
ggctatcttggtaaaggcttggtggtttctcttgataaattcactgcggtgaaaatgtac
gacaaagtacagtaccactggaaagcagaaattaaaaatctggtgggacgaattaagaaa
tctagtaatgatattgagaaaattcgcctgaaaaagattctcgactttatgcgagaaaca
gaaatggctgtggtgattagtctggaaggaagcgacagcgaagttgaaaaatttgcgaaa
caaggacttgatatcaaaccccaccgcgaaagaatgaataccgttgatgcacagggacat
gatatcgagtatcaatttaaagatgaggaaaattccctgcggttggtgtttgtctgcgcc
atgtggctgacgggtttcgatgcgcccactctctcgacgctttaccttgacaagcccatg
aaagaccacacgctgatgcaaactatcgcccgtgcgaaccgcatcacctcatatcagatt
cacaacgtcaccaaaaccaacggcgaaattattgattattacaacgtcttccgcaacatg
aagcaagccttggcagattacgctttgggcgatgatggagacaaagaagactcacccatt
caagaaaagtctaacctgtttgagttacttgatgatgcgatcgcccaaggactgaatttt
tgtcgggaactggggattgatttagaaagcatcctcaaaattcaggaaactttcgagaaa
ttaggacaatttaaccagtttgctgacactctactgcaaaaagatgaatggcgtaaagga
ttttttgtctatcaaaatactattacctcactctatgaagcctgtaaaccagagataatc
aagaaaccacgtccattggttttcatcttccaatatctgcgaggggtgattgatagcatc
attgaacgcaaagatattgaccatgcaagtttaaaaattgcggaactgctagatgaaagc
gtagttgctgataatcaaggaattaccactaaagaatatagtgcagaatacaacattatc
cagacaggtcaagtctgggatttaagcaaaattaacttcgagcaactcaaagccgaattt
agctacaaaccctataaaaatattgaaattaccgatttacgcagttttattgaagacaag
ctgaacaaaatgattcagcaaaacaccacccgcaccgacttcgcccaaaggctacaagcc
atcattgacaaatacaacgctggtggttcatcaattgataactactacgaagctctggtt
aattttacagaaaacctgaaagcagaagcagaaagacatattcgggaaggcttaacagaa
gacgaattggaactatttgatttactcaagaaagacaaaatgactgcggaggaaactcaa
aaagtcaaattagctgcacagtctctcttgcatcgactcatagcagaacaaccaaaagtc
ttagtgcaagattggtataaagatatgcagagccagcgcagagtgcaatccgtagttgaa
gcagttttagatcaaaacctgcctgaaagctatgatagagcgttatttaagtttaaatgc
gatacagtatttgatttgatgtatgaccacgctagcaaaggttcaaagtgggcgggataa

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