Trichormus variabilis: Ava_3608
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Entry
Ava_3608 CDS
T00277
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ava
Trichormus variabilis
Pathway
ava03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ava_3608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_3608
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ava_3608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ABA23214
UniProt:
Q3M722
LinkDB
All DBs
Position
4500796..4502565
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AA seq
589 aa
AA seq
DB search
MAKNETNAGLKIIPLGGLHEIGKNTCVFEYDDEIILLDAGLAFPTEAMHGVNIVLPDMTY
LRENRHKIKGMVVTHGHEDHIGGIAFHLKQFDIPVIYGPRLAMAMLEGKLEEAGVRDRTE
LRKVLPRDVVRIGKSFFVEYIRNTHSIADSFTVAIHTPLGVVIHTGDFKFDHTPVDGEKF
DLQRLAEHGEKGVLCLLSDSTNSEVPGFTPSEASVFPNLDRVFSQAEGRLFVTTFASSVH
RINMILQLAKKHNRVVTVVGRSMLNLIAHARNLGYIKCEDNLLQPLHMVRNLPDDNVLVL
TTGSQGETMAAMTRIANKEHPHIKIRQGDTVVFSANPIPGNTIAVVNTIDKLMQQGAKVV
YGRDQGIHVSGHGCQEDQKLMIALTRPKFFVPVHGEHRMLVKHSQTAQKSGIPAENMVII
QNGDIIELTEDSIRVAGKVQSGIELVDTTSSGMVSAKVLQERQRMAEEGLVTIAAAIDWQ
GKLLAKPEIHLRGVVTSVERSLLQKWVQQRIEEILSVRWSEFATSEGEQPEIDWGGLQGT
LERELQRSIRRELQCQPSVTLLMQIPDEPPVKVADGRRRRTRTAAQVAS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggctaaaaacgaaactaatgctggcctaaaaattattcccttaggcggtttacatgaa
attggtaaaaacacctgtgtttttgaatatgatgatgaaatcattcttttagatgcaggg
ttggctttccccacagaggcgatgcacggggtaaatatcgtcctgccagatatgacctat
ctacgggaaaatcgccacaaaatcaaaggtatggttgttacccacggccatgaagatcat
attggtgggattgcttttcacctcaaacaatttgacattccagtaatttatgggcctaga
ctagcaatggcaatgctagagggtaaattagaagaagctggagtacgcgatcgcacagaa
ttaagaaaagttttaccccgtgatgttgtacgcattggtaaatcattttttgtcgagtac
atccgcaacacccactccattgctgatagcttcaccgttgccattcacacccccttaggt
gtggtgattcacacgggagacttcaaatttgaccacaccccagttgatggtgaaaaattt
gacctgcaacgcctggcagaacacggcgaaaaaggcgtactttgtctgttgagtgattcc
actaactcggaagtcccaggcttcaccccttcagaagcatcagtttttcccaatctagat
agagtttttagtcaagcggaaggacggctattcgtcaccacctttgcttccagcgtccat
cgcatcaacatgattttgcaactggcgaaaaagcataaccgcgttgtcacagttgttggg
cgttccatgctgaacttgattgcccacgcccgtaatttgggttacatcaagtgtgaagat
aatctgttgcagcccttgcacatggtacgtaatctgccagacgataatgttctggttctc
accactggttctcaaggtgaaacaatggcagccatgaccaggattgccaacaaagaacac
ccccatattaaaatccgtcaaggcgatactgttgtcttctctgctaacccaattccgggg
aacacaattgctgtagtcaataccatcgacaaattgatgcagcaaggggcgaaagtagtt
tatggaagagaccaagggattcacgtttcgggtcacggctgtcaagaagaccaaaagctg
atgattgccttaactcgacccaagttctttgttccagtccacggtgaacatcggatgttg
gtgaaacattcccaaaccgcccagaagtcaggcattcccgccgagaatatggtgattatt
caaaatggggatatcatcgaactgacggaagactcaattcgtgtcgcggggaaagttcaa
tctggtatcgagttagtcgatactacaagctctggaatggtcagcgccaaagtactgcaa
gaacgtcaacgcatggcagaggaaggactggtgactattgcagctgctattgattggcaa
ggtaaattgttggctaaaccagaaattcacctgcgtggtgttgttactagtgtagagcga
tcgctgttacaaaagtgggtacaacagcgtattgaagaaattttgagcgtgcgttggtca
gagtttgcgacttctgaaggtgaacagcctgagattgattggggtggtttgcaaggaact
ttagaacgggagttgcaacgttctattcgtcgtgagttgcaatgtcagccatcggttact
ttgctgatgcaaattcctgatgagccacctgtgaaggttgctgatggtagaaggcggcgg
actcgcacggctgctcaagtagcttcttag
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