Trichormus variabilis: Ava_3626
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Entry
Ava_3626 CDS
T00277
Name
(GenBank) Chaperonin Cpn60/TCP-1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ava
Trichormus variabilis
Pathway
ava03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ava_3626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_3626
03110 Chaperones and folding catalysts [BR:
ava03110
]
Ava_3626
03029 Mitochondrial biogenesis [BR:
ava03029
]
Ava_3626
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ava04147
]
Ava_3626
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Ava_3626
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Ava_3626
Chaperones and folding catalysts [BR:
ava03110
]
Heat shock proteins
HSP60 / Chaperonin
Ava_3626
Mitochondrial biogenesis [BR:
ava03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Ava_3626
Exosome [BR:
ava04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Ava_3626
Exosomal proteins of other body fluids (saliva and urine)
Ava_3626
Exosomal proteins of breast cancer cells
Ava_3626
Exosomal proteins of colorectal cancer cells
Ava_3626
Exosomal proteins of bladder cancer cells
Ava_3626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ABA23232
UniProt:
Q3M704
LinkDB
All DBs
Position
complement(4520251..4521885)
Genome browser
AA seq
544 aa
AA seq
DB search
MAKRIIYNENARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIE
LEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGID
KATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVGQMIAEAMDKVGKEGVISLEEGK
SVTTELEITEGMRFDKGYISPYFATDPERMEAIFDEPFLLLTDKKIALVQDLVPVLEQVA
RAGRPLVIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGFGDRRKAMLEDIAILTGGQLI
TEDAGLKLENTKLESLGKARRITITKDSTTIVAEGNDVAVKGRVEQIRRQMEETESSYDK
EKLQERLAKLSGGVAVVKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGTTLAHL
TPELEVWANSNLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKAFNVGFNA
ATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDAAPAGAGAGGG
DFDY
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagcgcattatctacaacgaaaacgctcgtcgcgctctagagcgaggcattgat
atcctggctgaggctgtagctgttacccttggccccaaaggtcgtaacgtagtattagag
aaaaaatttggtgcgccgcaaatcgttaatgacggtgtaaccatcgctaaagaaatagaa
ttagaagatcatattgaaaacactggcgttgctttgattcgccaagcagcttccaaaacc
aacgatgcagcaggtgacggtacaaccaccgcaaccgttttggctcatgccattgtgaaa
gaaggtttgcggaacgtagcggctggtgctaacgcaattctgttgaagcgcggtattgat
aaagctaccggcttcttggttgacagaatcaaagaacacgcccgtcctgtagaagattct
aaatccatcgctcaagttgggtcaatctctgctggtaacgacgatgaagtcggtcagatg
attgccgaagcaatggacaaagtaggtaaggaaggcgttatctctctagaagaaggtaag
tctgtaactaccgaattggaaatcaccgaagggatgcgctttgacaaaggctatatttcc
ccctacttcgctaccgacccagagcggatggaagcgattttcgatgagcctttcttgttg
ttgaccgataagaaaattgctctcgtccaagatttagtaccagttctagagcaagtagct
cgtgctggtcgtcctctggtgattatcgctgaagatattgaaaaagaagctctagcaacc
ctagtagttaaccgtttacgcggtgtactcaacgtagctgctgtgaaggctcctggcttc
ggcgatcgccgtaaggctatgctagaagatatcgctatcctcaccggcggtcaactaatc
accgaagatgctggtctgaagctagaaaacaccaagctggaaagcttgggtaaagctcgc
cgcatcaccatcaccaaagacagcaccacaattgttgctgaaggtaacgacgttgctgtt
aaaggtcgtgtagaacaaattcgtcgtcaaatggaagaaactgaatcttcctacgacaaa
gaaaaactacaagaacgtttggctaaactttctggtggtgtagctgtagttaaagttggt
gcagctaccgaaaccgaaatgaaagacaagaaacttcgcctagaagacgctatcaacgct
accaaggcggctgtagaagaaggtatcgttcctggtggcggtacaaccctagctcacctc
actcctgaattggaagtttgggctaacagcaacctcaaagatgaagagttgactggtgct
ttgattgtcgctcgtgcattacccgcgcctctcaagagaattgcggaaaacgctggtcaa
aacggcgctgtaattgctgaacgcgtcaaagaaaaagcattcaacgttggtttcaacgcg
gctaccaacgaatttgtagatatgttcgaggctggtatcgttgaccccgcgaaggtaaca
cgttctgcactgcaaaacgctgcttccatcgctggaatggtgttaacaaccgagtgcatc
gttgttgacaaaccagaacccaaggatgctgctcctgctggcgctggtgctggcggcggt
gacttcgattactaa
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