KEGG   Trichormus variabilis: Ava_3658
Entry
Ava_3658          CDS       T00277                                 
Name
(GenBank) DEAD/DEAH box helicase-like protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ava  Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:ava00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ava03400]
    Ava_3658
Enzymes [BR:ava01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Ava_3658
    5.6.2.6  RNA 3'-5' helicase
     Ava_3658
DNA repair and recombination proteins [BR:ava03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    Ava_3658
SSDB
Motif
Pfam: DEAD Helicase_C ResIII WHD_Lhr Cas3-like_C_2 DUF3907
Other DBs
NCBI-ProteinID: ABA23264
UniProt: Q3M6X2
LinkDB
Position
complement(4563467..4565635)
AA seq 722 aa
MTNAFNRLAPFIQEYIYHHQWTELRPVQTAACEVVFDTDAHLLIAAATAAGKTEAAFLPV
LTLLYNNPASTIGALYIGPIKALINDQFARLNDLLRLADIPVYHWHGDVAQSRKNKLLQN
PQGILQITPESLESLLVNKHKEILRLFGDLRFVVIDEIHAFMGSERGCQIICQLQRLANL
TKTQPRRIGLSATLGDYSMAEEWLRLGTDKQVITPKVEAGKRQIKLALEHFYIANDVDES
EATAYEKYIFNLSQSRKCLIFANNRTQTESIIASLRQIANQQAQPDIYHVHHGSISASLR
QVAENAMREPHNPAVTAATLTLELGIDIGHLERVIQLESPLSVASFLQRLGRAGRRGEAA
DMRFICAEDEISAEEPLPEQIPWQLLQCIAIIQLYLEERWIEPIKPIKYPLSLLYHQTMS
ILVAVGEISPADLAKQVLSLPPFAAISQEDFKLLLRYLIDIGHIQHTEQNKLILGLAGER
IVGKFQFYAVFADNKEYTVKQGTKEIGSIATPPVVGKQFALAGVTWEVTEIDFKKRVVIV
KQVAGKATSYWRGGSGTIHTKVLQKMRLILLEDKEYSYLQKNALQRLRKVRELVKEVGLD
KQYILQLEKGRCCIFPWMGTVAYRTLERLLNNFCRESLEISSIGGVNPYYLTIKLGKGKF
KNLQPEIVSLCEQRIMSEDLISSAEAPEMQKYDEFIPHPLLRKAFAYDYLDMDEMRKVIG
NW
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgactaacgccttcaacagacttgcaccttttattcaagaatatatttatcatcatcag
tggactgaattaagacctgttcaaacggcagcttgtgaggtggtatttgacaccgatgct
catctattaattgccgccgccacagctgcggggaaaacagaagcggcttttttaccagtt
ttaactctgttgtacaacaatcccgccagcaccataggcgcactatatataggccctatc
aaagctttaattaatgaccaatttgcacgcctcaatgatttactaagattagcagatatc
ccggtttaccattggcacggtgatgtggcgcaaagtcgcaagaataagcttctacaaaat
ccccaagggattctccaaattacaccagaatctctagaaagtttattagtcaataaacat
aaagaaatattacgtttatttggcgatttaagatttgtagttattgatgaaatccacgcc
tttatgggttcggaacgtggttgtcagattatttgtcaattacagcgtttggcaaactta
accaaaacccaaccccgccgcattggtttatcagcaactttgggtgattattcaatggcg
gaagagtggctgcgtttgggaactgataaacaagtaattacgccaaaggtggaagctgga
aaacgccaaattaaattagccttagaacacttttatattgcgaatgatgtagatgaatca
gaagccacagcctacgaaaaatatatttttaatctgagtcaatctcgcaaatgtttaatt
ttcgcaaacaatcgtacacaaactgaatcaataattgcttctttgcgacaaattgccaac
caacaagcacagccggatatatatcatgtacatcatgggagtatatctgctagcttacga
caagtggcagaaaatgctatgcgcgaaccccataacccggcggtgactgcggcgactctg
actttagagttaggtatagatataggtcatttagaacgagttattcaattagaatcaccc
ctttctgtagcgagttttttacaacgtttggggcgtgcgggtagaaggggtgaggctgct
gatatgcgctttatttgtgctgaggatgaaatttcagcagaagaacctttaccagagcaa
attccttggcaactgttacagtgtatagcgattattcaactttatttagaagaacgttgg
attgaaccgattaagccaattaaatatcctttgagtttgttatatcaccaaacaatgagt
attttagttgcagtgggggaaatttcccctgctgatttagctaaacaggttttgagtttg
cccccatttgcggcgatttctcaggaagattttaagttactgttgcgttatttaattgat
attggtcatattcaacatactgaacagaataaattaattctgggtttagctggtgaaaga
atagttggtaagttccagttttatgctgtgtttgcagataacaaagaatatactgttaaa
caaggtacaaaggaaattggtagtatcgctacaccgccagttgttggtaaacagtttgcc
ttagcaggggtaacatgggaagttacagaaattgatttcaaaaaaagagtagtgatagtt
aagcaagtggcaggtaaagctacaagttattggcgcggtggtagtgggacgattcatact
aaggttttgcaaaagatgcgccttattttattggaagataaggaatatagctatttgcaa
aaaaatgctctccaacgtttacgaaaagttcgtgaattggtaaaagaagttggcttggat
aagcagtatattttgcagttagaaaaaggtagatgttgtatctttccttggatgggtact
gtggcttaccgcactttggaaaggttactgaataatttttgtcgagagtctttggaaatt
agtagtattggtggggtaaatccctattatttgacaattaagttaggtaaggggaaattt
aaaaatcttcagccagagattgtctctttgtgtgaacaaagaattatgagcgaagatttg
ataagttcggcggaagcgccagagatgcagaaatatgatgagtttattcctcatccactg
ttacgaaaagcttttgcttatgactatttggatatggatgaaatgagaaaggtaattggt
aattggtaa

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