Trichormus variabilis: Ava_3766
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Entry
Ava_3766 CDS
T00277
Name
(GenBank) Chaperonin Cpn60/TCP-1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ava
Trichormus variabilis
Pathway
ava03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ava_3766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ava03019
]
Ava_3766
03110 Chaperones and folding catalysts [BR:
ava03110
]
Ava_3766
03029 Mitochondrial biogenesis [BR:
ava03029
]
Ava_3766
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ava04147
]
Ava_3766
Enzymes [BR:
ava01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Ava_3766
Messenger RNA biogenesis [BR:
ava03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Ava_3766
Chaperones and folding catalysts [BR:
ava03110
]
Heat shock proteins
HSP60 / Chaperonin
Ava_3766
Mitochondrial biogenesis [BR:
ava03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Ava_3766
Exosome [BR:
ava04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Ava_3766
Exosomal proteins of other body fluids (saliva and urine)
Ava_3766
Exosomal proteins of breast cancer cells
Ava_3766
Exosomal proteins of colorectal cancer cells
Ava_3766
Exosomal proteins of bladder cancer cells
Ava_3766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
RAMA
Motif
Other DBs
NCBI-ProteinID:
ABA23371
UniProt:
Q3M6L5
LinkDB
All DBs
Position
4686913..4688619
Genome browser
AA seq
568 aa
AA seq
DB search
MEALEKGNMAKIISFDEESRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDG
ITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNP
VSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSAGNDEEVGAMIAQAVEKVTKDGV
ITVEESKSLTTELDVVEGMQIDRGYISPYFITNNERQTVELENVRILITDKKISSIQELV
PVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAI
LTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLE
ETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPG
GGKTLIYLASKVDEIKKNFDEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSD
FNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPA
DAGMGGMGGMGGMGGMGGMGGMGGMGMF
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgctagagaaaggaaacatggcaaaaattatttcgtttgatgaagaatcacgg
cgtgctttagagcggggtgtcaatgccctggctgatgctgtaaaaattaccttgggtccc
aagggtcgcaacgtgcttttagaaaaaaaatatggcacaccccaaattgtgaacgatggt
attaccgttgctaaagaaattgaattagaagatcctttagaaaatactggtgccagatta
attcaagaggtagcagctaaaaccaaggatgtagctggtgatggcacaactacggctacc
gttttagtgcaagccctaattaaagaaggtttgaagaacgtcgcggctggtagcaatcca
gtaagcttaaagcggggtatcgataaaactactgaggcgctagtagcggaaattgctaaa
gtcgccaagcctgtagaaggtagtgcgatcgctcaagttgccactgtttcagctggtaac
gatgaagaagttggtgccatgattgctcaagcagtggaaaaagtcaccaaagatggtgta
atcactgtggaagaatctaaatccctgacaactgaactagacgtagtggaagggatgcag
attgacagaggttatatttccccctacttcatcaccaacaacgagcgccaaacggtggag
ttagaaaatgtgcggattttgattactgacaaaaaaatcagcagtattcaagaattagtc
cccgttttagaaaaagtagctcgtttgggtcaacccctactgatcattgctgaagatgta
gaaggagatgccctggctactctagttgtgaacaaagcacggggtgtactttctgtagcg
gcaattaaagccccaggatttggcgaacgccgcaaagcattgttgcaagacatcgccatc
ctcacagacggtcaactaatttcggaagaaattggcttaagcttagataccgcttctcta
gaagctttgggtacggcgcagaaaatcacaattgaaaaagacaacaccacaattgttgct
ggtaacaccaccaagccagaaattcaaaagcggattgcacaaattcgcagacaactggaa
gagactgattctgagtacgatagcgagaaattacaagaacgtattgccaagttagctggt
ggtattgcagtgatcaaagtcggtgcagcaactgaaaccgaactcaaagaccgcaagctc
agaattgaagacgcactcaacgccaccaaagcggctgttgcggaaggtatcgttcctggt
ggtggcaaaactctgatttacttggcgagtaaggtagacgagattaagaaaaactttgac
gaagaagaaaaaatcggcgctgacatcgttaaacgagctttagaagctcctttacggcag
attgcagataacgctggtgtagaaggttctgtcatcgtctccagagtcaaagacagcgat
ttcaacaccggttacaacgctgctaccggagaatttgaagacctgattgcggctggtatt
atcgaccccgcaaaagttgtccgttcagcattgcaaaacgccgcttccattgccggtcta
gttttaaccaccgaagcgatcgttgtggaaaaaccagagaaaaaagctgctgctcctgct
gatgccggtatgggcggcatgggtggcatgggcggtatgggcggtatgggtggcatgggt
ggcatgggcggtatgggtatgttctaa
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