Trichormus variabilis: Ava_3907
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Entry
Ava_3907 CDS
T00277
Name
(GenBank) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
KO
K01601
ribulose-bisphosphate carboxylase large chain [EC:
4.1.1.39
]
Organism
ava
Trichormus variabilis
Pathway
ava00630
Glyoxylate and dicarboxylate metabolism
ava00710
Carbon fixation by Calvin cycle
ava01100
Metabolic pathways
ava01110
Biosynthesis of secondary metabolites
ava01120
Microbial metabolism in diverse environments
ava01200
Carbon metabolism
Module
ava_M00165
Reductive pentose phosphate cycle (Calvin cycle)
ava_M00611
Oxygenic photosynthesis in plants and cyanobacteria
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
Ava_3907
09102 Energy metabolism
00710 Carbon fixation by Calvin cycle
Ava_3907
Enzymes [BR:
ava01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.39 ribulose-bisphosphate carboxylase
Ava_3907
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Gene cluster
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Motif
Pfam:
RuBisCO_large
RuBisCO_large_N
DUF6611
Motif
Other DBs
NCBI-ProteinID:
ABA23512
UniProt:
Q3M674
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Position
complement(4857469..4858899)
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AA seq
476 aa
AA seq
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MSYAQTKTQTKSGYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAA
ESSTGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEGSITNVLTS
IVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLG
LSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVSDAISKAQAETGEIKGHY
LNVTAPTCEEMLKRAEYAKELNQPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHA
VIDRQKNHGIHFRVLAKALRLSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKS
RGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGNAPGATA
NRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACELWKEIKFEFEAMDTV
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgctcaaacgaagactcagacaaaatctgggtataaagccggggttcaagat
tacagactaacttattacacacctgattacacacctaaagatacagatattctggcggcg
ttccgtgttacaccccagcccggagttccctttgaggaagcggctgcggctgtagcggct
gagtcttctactggtacttggacgaccgtatggacagacctgttaaccgatctagatcgt
tacaaaggtcgttgctacgatatcgaaccagtacctggcgaagacaaccaattcattgcc
tacatcgcttatcctttggatctgtttgaagaaggctccatcaccaacgttttaacctca
attgtaggtaacgtatttggttttaaagcattacgcgcattgcgtttggaagacattcgc
tttcctgttgcttacatcaaaactttccaaggccctcctcacggtatccaagttgagcgt
gacaaattaaacaaatatggtcgtcctttgttgggttgtaccatcaaaccaaaattaggt
ctgtctgctaagaactacggacgcgctgtatacgagtgtttgcgcggtggtttggacttc
accaaagacgacgaaaacatcaactctgcaccattccaaagatggcgcgatcgcttcctg
tttgtgtctgatgctatcagcaaagcacaagcagaaacaggcgaaatcaaaggtcactac
ctcaacgtgacagctcctacctgtgaagaaatgttgaagcgggctgagtacgctaaagaa
ctcaatcagcccatcatcatgcacgactacctaacagcaggtttcaccgctaacaccacc
ttggctcgttggtgtcgtgacaacggcgttctactgcacatccaccgcgcgatgcacgca
gtaatcgaccgtcaaaagaaccacggtatccacttccgtgtattagctaaagccctacgt
ctatctggtggtgaccacatccacaccggtaccgtagtaggtaaattggaaggtgaacgc
ggtatcacaatgggcttcgttgacctattgcgtgaaaactacgttgaacaagacaagtct
cgcggtatctactttacccaagactgggcttctttacctggtgtaatggcagttgcttcc
ggtggtatccacgtatggcatatgcccgcattggtagaaatcttcggtgatgactccgta
ctgcaatttggtggtggtacactcggacacccctggggtaacgctcctggtgcaaccgct
aaccgtgtagctttggaagcttgcgtccaagcgcgtaacgaaggtcgtaacttggctcgt
gaaggtaacgacgttatccgtgaagctgctaagtggtctcctgaattggctgtcgcttgc
gaactgtggaaagaaatcaagttcgagtttgaggcaatggataccgtctga
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