Trichormus variabilis: Ava_3987
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Entry
Ava_3987 CDS
T00277
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
ava
Trichormus variabilis
Pathway
ava00061
Fatty acid biosynthesis
ava00071
Fatty acid degradation
ava01100
Metabolic pathways
ava01212
Fatty acid metabolism
ava02024
Quorum sensing
ava04146
Peroxisome
Module
ava_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Ava_3987
00071 Fatty acid degradation
Ava_3987
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Ava_3987
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ava_3987
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
ava01004
]
Ava_3987
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ava04147
]
Ava_3987
Enzymes [BR:
ava01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Ava_3987
Lipid biosynthesis proteins [BR:
ava01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Ava_3987
Exosome [BR:
ava04147
]
Exosomal proteins
Exosomal proteins of breast milk
Ava_3987
Exosomal proteins of breast cancer cells
Ava_3987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
PP-binding
DUF7080
Motif
Other DBs
NCBI-ProteinID:
ABA23592
UniProt:
Q3M5Z4
LinkDB
All DBs
Position
complement(4956664..4958652)
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AA seq
662 aa
AA seq
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MNISQNVERGCCLFPNKPALIFEGLYFTYKQLNEMANRVANALLGLGIERGDRIALLLPN
IPEFVISYLGILKIGAIAVSINPNLQSDELKFILNDCGAAVLVTTETLREKLPKVDLPHL
KHIIIAEGQAGEAIALSEFMANASPNARAVEIERDEPAAILYTSGTTGFPKGATLSHGNV
ISNMHSMKHCCEMRPNDQILLFLPMFHCFGQNAVLNSGLNTCATIILQRSFDPETVLTTI
SEYNITIFFGVPTTFILLCDKASIRDLDSVRYYFSAAAGLPVEIAKRWQDKFGKVINQGY
GLTETSPLASYNHELRYKLGSIGSPIENVEMKIVSLDDGCEVAPGELGEIVIRGVNVMLG
YWNRPAETAKAMKNGWFHTGDIGQIDELGYFYIVDRLKDMINNGGLKVYPAEVENVIYQH
PGIAEVAVYGVPDSVLGEQVKASIVLKPDQAVTEAEIIAFCYQKLAQYKVPSAVEFVSSI
PKNPTGKILKRLLRQENSAAPSHTVVSKTQTSASVKVSYQTAELIENWIIDWVVRKLAVA
AQSIDQSKSFADYGLDSVRAVKLAQELSEWLGYPLEATIVWNFSTIESLARHLASQKITQ
PTELAKTKPESNLHTENLLVSVELPTNNAEPTESADLKALSDAEIAELLTKEIATVKQRR
LV
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaatatttcccaaaatgtggagcgtggttgctgcctttttcctaacaaaccagcgctc
atttttgaaggtttatattttacttataaacaactcaatgaaatggcaaatcgcgttgcc
aatgctttactggggttggggattgaacgtggcgatcgcatagcattattattaccaaat
attcctgaatttgtgatttcctatctagggattctcaagattggggcgatcgcagtttct
attaacccaaatctgcaaagcgatgaactcaagtttattctcaatgactgtggagcagct
gtactcgtaaccacagaaacgctgcgagaaaaattgcccaaagtcgatttaccccacctc
aagcacatcataattgctgaggggcaagcaggtgaggcgatcgccttgagtgaattcatg
gccaatgcttcccctaacgcccgtgctgtggagatagaacgtgatgagccagcagcgatt
ctttatacttctggtacaacaggttttcctaaaggcgctactttatctcatggcaatgtg
atttccaatatgcactccatgaagcactgttgtgaaatgcgccctaatgatcaaatttta
ctatttttaccgatgttccactgttttgggcagaacgcagttctcaatagtggactgaat
acctgtgcaacgatcattttacagcgatcgttcgacccagaaacggtactgacaaccatc
agcgaatataatattacaatcttttttggtgttcccactacttttattcttttatgtgat
aaagcatctatccgcgatttggattcagtgcgttactacttctctgcggccgcaggtttg
cctgtagaaattgccaaacgttggcaagacaagtttggtaaagtcatcaaccaagggtat
ggtctgacagaaacatcaccattagctagttataaccacgaattgaggtacaaactcggt
tctattggttcaccaattgaaaatgtcgagatgaagattgtcagcctggatgatggttgc
gaagttgcccctggtgaactcggtgaaatcgtgattcgcggtgtcaatgtcatgctaggt
tactggaatcgcccggctgaaactgccaaagccatgaagaacggatggtttcacaccggt
gacattggtcaaatagacgaattaggctacttttacatcgttgaccgcctcaaagatatg
atcaacaacggtggattaaaagtatacccagccgaagttgaaaatgttatttaccagcat
ccaggtattgcagaggtagctgtctacggtgtaccagattcagtactaggtgaacaggtg
aaagctagtattgtcctcaaaccagaccaagcggttacagaagcagaaatcattgccttc
tgttaccagaaactagctcaatataaagttcctagtgccgtcgaatttgtctcctccatc
cccaagaaccccacaggcaaaatactcaagcggctacttcggcaagaaaattctgctgcg
ccttcccatactgtggttagcaaaacgcaaacatctgcgtcggtaaaagtctcttaccaa
actgcagaattgatcgaaaactggattatcgattgggtagtgagaaaattggcagtagca
gcccagtcaatcgaccaaagtaagtcatttgcagattatggattagattccgtcagggct
gtcaagttagcccaagaattgagtgaatggttgggatatcccttagaagcaactatagtc
tggaacttctcgaccatcgaatctttagcacgccacctagccagtcaaaaaattacccaa
ccgacagaattagccaagacaaagccagagtctaatctgcacacagaaaatctgttggtg
tctgtagaattgccgacaaacaacgcagaaccgaccgaatcagcagacttaaaagcactc
tcagacgcggaaatagctgaattactcaccaaagaaattgccacagttaaacaaaggaga
ttagtatga
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