Trichormus variabilis: Ava_4292
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Entry
Ava_4292 CDS
T00277
Name
(GenBank) deoxyribodipyrimidine photo-lyase type I
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_4292
Enzymes [BR:
ava01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Ava_4292
DNA repair and recombination proteins [BR:
ava03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Ava_4292
Prokaryotic type
Ava_4292
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
TTC7_N
Motif
Other DBs
NCBI-ProteinID:
ABA23891
UniProt:
Q3M545
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Position
5377942..5379381
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AA seq
479 aa
AA seq
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MSDLVLFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILERDDVAPVRVTYMIGSLQ
ELQQRYVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK
GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ
ELAQKAGVKALPTAKDLGFFWDADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNFPGVNG
TSQLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAMYNFPE
LADGAYRATFKNFPWETNEEHFQAWCEGKTGYPIVDAAMRQMNESGWMHNRCRMIVASFL
TKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQSQKFDPDA
EYIRQWVPELRSMDTEYLVTGKITPLERHAVGYVKPIVDHQKQQQLFKQRYQQQKAIGI
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacttagttttattttggcatcgccgcgatttacgtattaccgacaatatagga
ctagctaccgctagacaacacagttctaaagtcgtgggggtattttgtttagacccgaat
attttagaaagggatgatgttgcccctgttagagttacttacatgattggtagtttacag
gagttgcaacagcgatatgtgcaagcaggaagccaattattaatcctacgtggcgaccca
gtgcaagctatccctcatttagcagaggcattaaacgccaaagctgtgttttggaattgg
gatgtggaaccatattcacaaacacgcgatcgcgccattattgctacccttaaagataaa
ggtatccaatgtcttacccacaactgggatcaaatactccattccccagacgaaatccgt
tcaggtagcaacacaccttacactgtttacacccccttttggaaaaattggagtagcaaa
cctaaagctaaaccagtagaaaccctgcacaatgtcgaaggactaacagaagctgaacag
gaacttgctcaaaaagctggagtcaaagccttacccacggcgaaagatttaggatttttc
tgggatgcagacttgataattgccccaggggaagcagcagctcaagccaagttagcagaa
tttacagccaaagccatcactgaataccaagaacagcgcaattttcctggagttaacggc
acatcacagctaagtgcagccttaaaatttggtgtcattggcattcgcaccgtttggcaa
acaactttagaagctttagaaaatagccgcagtgaagaaactacaacctctattcgcaca
tggcaacaagaactggcctggcgagaattttatcaacacgctatgtataacttcccagaa
ttagctgatggtgcttaccgcgcaaccttcaagaattttccttgggaaaccaacgaagaa
cattttcaggcttggtgtgagggcaagaccggttatcccatcgttgatgcagccatgcgc
cagatgaacgaaagcggttggatgcacaaccgttgtcgaatgattgtcgctagttttctg
accaaagatttgttaattaatccccaatggggagaaaaatactttatgcagaagctgatt
gatggtgatttatctgccaacaacggcggctggcaatggagtgcttctagcggtatggac
cccaagccactacggattttcaaccccgccagccaatcacaaaaatttgacccagatgca
gaatatattcgtcaatgggtacctgaattgaggtcaatggatacggagtatttagtaacg
ggtaagattacgcctcttgagcgtcatgctgtgggttatgttaaaccaatcgtggatcat
caaaaacagcagcaactctttaaacaacgttatcaacaacaaaaagccatcggtatttaa
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