Trichormus variabilis: Ava_4396
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Entry
Ava_4396 CDS
T00277
Name
(GenBank) Peptidoglycan-binding domain 1
KO
K01448
N-acetylmuramoyl-L-alanine amidase [EC:
3.5.1.28
]
Organism
ava
Trichormus variabilis
Pathway
ava01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01503 Cationic antimicrobial peptide (CAMP) resistance
Ava_4396
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ava01011
]
Ava_4396
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ava03036
]
Ava_4396
Enzymes [BR:
ava01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.28 N-acetylmuramoyl-L-alanine amidase
Ava_4396
Peptidoglycan biosynthesis and degradation proteins [BR:
ava01011
]
Peptidoglycan biosynthesis and degradation
Amidase
Ava_4396
Chromosome and associated proteins [BR:
ava03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
Ava_4396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amidase_3
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ABA23994
UniProt:
Q3M4U2
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All DBs
Position
complement(5508284..5509225)
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AA seq
313 aa
AA seq
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MRYGIDIGHNCSPDTGARGIKFEDNLTLDVGNRVISKLKALGHEVISCKPDRATSVKDSL
SQRCNKANANKVEVFVSIHFNAFNGQANGTEVFATSDNGRRIAKPVLDEIIKLGYFNRGV
KSGSHLFVLRNTNMPAILVECCFIDAQKDMNLFDPEATANAIVKGLTGKLPTTPVPSVPD
EEQNIDTSILRLQKSLNRLKITDRSNKSLVENGQLNAETKFAIERFQGIVGLEKTGIVNE
ATWNAINLILAKRIIRQNHAGGPVVRYLQFRVGVEVDGIYGAQTEAAIKRFQRQNGLLAD
GIIGPMSWQKLIG
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgagatatggaattgatattggtcataattgctcaccagacaccggagctagagggatt
aagtttgaagataatctcactttagatgtaggcaatcgagtcatatctaagttaaaagct
ttaggacatgaagtaatatcctgtaaaccagatagagctacttcagtcaaagattctctc
tctcaaagatgtaataaggctaatgccaacaaagtagaggtttttgtttccatccatttt
aatgcttttaatggacaagccaacggtactgaagtatttgccacgagtgataatggtaga
agaatcgccaaaccagtattagacgaaattattaagttaggatattttaatcgtggggtt
aaaagtggttctcacctgtttgttttgcgtaatacaaatatgccagcaatattggtagag
tgttgctttattgatgcccaaaaagacatgaacttatttgatccggaagcaactgctaat
gcaattgtcaagggattaacaggaaaattaccaactactcctgtaccttctgttccagat
gaagaacaaaatatagatacgagtattttgagactacaaaaatcattaaatcgtctcaaa
attacagatagaagtaataaatctctcgttgaaaatggccaacttaatgcagagacaaag
tttgctatagagagatttcaaggcatcgtgggactggagaaaactggcatcgtcaatgag
gcaacatggaatgccatcaatctgattttagctaaaagaattatcagacagaaccacgct
ggtggcccggtggtgagatacttacaattccgagtaggagttgaagttgatggtatttat
ggcgcgcaaacagaagcagcaattaaaagattccaaagacaaaatggtttgctggccgat
ggaattattgggccaatgagttggcagaaattaatcggttag
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