Trichormus variabilis: Ava_4466
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Entry
Ava_4466 CDS
T00277
Name
(GenBank) transcriptional regulator, LysR family
KO
K21703
LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ava03000
]
Ava_4466
Transcription factors [BR:
ava03000
]
Prokaryotic type
Helix-turn-helix
LysR family
Ava_4466
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
PBP_like
PBP_like_2
HTH_30
Motif
Other DBs
NCBI-ProteinID:
ABA24064
UniProt:
Q3M4M2
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Position
complement(5592298..5593248)
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AA seq
316 aa
AA seq
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MNQATLHQLKVFEAAARHGSFTRAAEELFLTQPTVSMQIKQLTKSVGLPLFEQVGKRLYL
TEAGRELFATCRQIFETIAQFEMKVADLKGLKQGQLRLAVITTAKYFIPRLLGPFCQLYP
GIDISLQVTNHERILERMMSNMDDLYIMSQVPEHLDVTSQPFLDNPLVVFAPANHPLAQE
KNIPIQRLSNEPFIMREPGSGTRRAVQNLLEEQGISVKVKLELGSNEAIKQAIAGGLGIS
VLSRHTLLSDAAEFSILDVQHFPIKRTWYMVYPSGKQLSIVARTYYEYLLDAAKKFVEQT
EQLNFPVPVPEYSVVE
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccaagcaacgctacaccagttgaaggtgttcgaggcggcggcacggcacggtagc
tttactcgtgctgctgaggagttatttctcacccaacctaccgtctctatgcaaatcaaa
cagctgacaaaatctgtaggtttaccactatttgagcaggtgggaaagcgcctatatttg
accgaagcaggacgagaattattcgcaacctgtcggcaaatatttgagactattgcccag
tttgaaatgaaagtagctgatttaaaagggctaaaacaagggcaattaagattagcagta
atcaccactgctaaatattttattccccgcttattggggcctttttgccaactttatcca
ggcattgacatttcattacaagtcacgaaccacgaacgcatcctagagcggatgatgagt
aatatggatgacttgtatattatgagtcaagtcccagagcatttggatgtaactagtcag
ccatttttagataatcctttagtagtatttgctcccgcaaatcatccactagcacaagaa
aaaaatattcccatacaacggttgtccaatgaaccctttattatgcgggagccaggttcg
ggaacacgccgtgctgtacaaaatctgctggaagaacaaggtatttccgtaaaagtgaag
ctggaattaggtagtaatgaggcaatcaaacaagcgatcgccggtggactgggaatttct
gttttatctcgacataccctattgtctgatgccgccgaattcagcattctggacgtgcag
cacttccccattaagcggacttggtacatggtttacccgtctggcaaacagttatctatt
gtggctcgtacctactacgagtatttgctagatgcagccaaaaagtttgtagagcaaaca
gagcaactaaatttccctgttcctgtgcctgagtatagtgtagttgagtaa
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