Trichormus variabilis: Ava_4469
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Entry
Ava_4469 CDS
T00277
Name
(GenBank) Ribulose bisphosphate carboxylase, small chain
KO
K08698
carbon dioxide concentrating mechanism protein CcmM
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99981 Carbohydrate metabolism
Ava_4469
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GFIT
Motif
Pfam:
RuBisCO_small
Hexapep
GSG-1
Hexapep_2
LbH_EIF2B
Ubiquitin_TPR1
CinA_KH
Motif
Other DBs
NCBI-ProteinID:
ABA24067
UniProt:
Q3M4L9
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Position
complement(5595463..5597133)
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AA seq
556 aa
AA seq
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MAVRSTAAPPTPWSRSLAEAQIHESAFVHPFSNIIGDVHIGANVIIAPGTSIRADEGTPF
HIGENTNIQDGVVIHGLEQGRVVGDDNQEYSVWVGSSASLTHMALIHGPAYVGDNSFIGF
RSTVFNAKVGAGCIVMMHALIKDVEVPPGKYVPSGAIITNQKQADRLPDVQPQDRDFAHH
VIGINQALRAGYLCAADSKCIAPLRNDQVKSYTSNTVIGLERSSEVASNSLGAETIEQVR
YLLEQGYKIGTEHVDQRRFRTGSWTSCQPIEGRSVGDALAALEACLADHSGEYVRLFGID
PKGKRRVLETIIQRPDGVVAGSTSFKAPASNTNGNGSYHSNGNGNGYSNGAASGKVSAET
VDQIRQLLAGGYKIGTEHVDERRFRTGSWNSCKPIEANSPGEVVAALEECIDSHQGEYIR
LIGIDPKAKRRVLESIIQRPNGQVAPSTSSPRTVVSASSASSGTATATATRLSTEVVDQV
RQILGGGYKLSIEHVDQRRFRTGSWTSTGAISATSEREAIAVIEASLSEFAGEYVRLIGI
DPKAKRRVLETIIQRP
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcagtccgcagcacggcggcacccccaaccccgtggtcgaggagtttagctgaagcc
caaatccatgaaagcgcctttgtacatccgttttctaacattattggggatgttcatatc
ggtgcaaatgtcatcattgctccagggacttcaatcagagccgatgaaggtacacccttt
catattggtgaaaataccaatattcaagacggtgtagtgattcacggtttagagcaaggt
agagtcgttggtgatgacaaccaagaatactccgtttgggtgggtagcagcgcttccttg
acacatatggcgttgattcatggccctgcttacgttggggataactcgtttattggtttt
cgctctacggtatttaatgccaaggtgggagcaggttgcatcgtcatgatgcacgcttta
attaaggacgtagaagttccccctggtaagtacgttccttcaggagcgatcatcactaat
caaaagcaggccgatcgcttgccagatgtgcaacctcaagacagggattttgctcatcac
gtaattgggattaatcaagcattgcgggctggatatctttgtgctgcggatagcaagtgt
attgccccccttcgcaatgatcaagttaaatcttatacaagtaatacagttattgggtta
gaaaggagtagtgaagtggcaagcaacagcttgggtgcagaaaccatagagcaggtacgc
tatttattagagcaaggctataagattgggacagaacacgtagatcaaagaagatttcgt
acaggttcttggactagttgccagccaattgaaggtagatccgtaggagatgccttagca
gctttagaagcttgtttagctgaccatagtggtgagtatgtacgtttattcggcattgac
cccaaaggtaaacggcgagttttagaaacaattatccaacgtcccgatggtgtggtggca
ggttctaccagcttcaaagcgcctgctagtaacaccaatggcaatggtagctaccacagc
aacggcaatggtaacggttatagtaacggtgcagccagtggtaaagtcagtgctgaaacc
gtagaccaaattcgccagttattggctggtggttacaaaattggcacagaacacgtagat
gagcgtcgcttccgtacaggttcctggaatagctgtaagccaattgaagcaaactcccca
ggtgaagtagtggcggctttagaagaatgtatcgacagtcatcaaggtgagtacatccgc
ctcatcggcattgacccgaaagccaaacggcgtgtattggaaagtattatccaacgtccc
aacggtcaagtagctccatcgacgagtagccccagaaccgtcgtgagtgcctcatctgct
tcatccggaacagctaccgcaacagctacccgcttaagtacagaagtagtagatcaggtg
cggcaaatactgggtggtgggtataaactcagcattgaacacgtagatcaaagaagattc
cgtactggttcttggactagtaccggggcaatttccgctacttccgaaagagaagcgatc
gcagtcatagaagcctccttatccgaatttgctggagaatatgtgcgcttgattggtatc
gaccccaaagccaagaggcgagtgttggaaacaatcattcagcgtccatag
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