Trichormus variabilis: Ava_4550
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Entry
Ava_4550 CDS
T00277
Name
(GenBank) Cyclic nucleotide-binding domain (cNMP-BD) protein
KO
K10914
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
Organism
ava
Trichormus variabilis
Pathway
ava02020
Two-component system
ava02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Ava_4550
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ava_4550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ava03000
]
Ava_4550
Transcription factors [BR:
ava03000
]
Prokaryotic type
Helix-turn-helix
CRP/FNR family
Ava_4550
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ABA24148
UniProt:
Q3M4D8
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All DBs
Position
5703482..5704198
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AA seq
238 aa
AA seq
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MQASLEQLSQIMVFVGIETSDKESLQPYTQVQGYKKGEIILHEGDRLPAKLYAVVSGSIQ
VTKTATTGKETILRGLNAGEIFAAPALLGDSIAPATVTAESDCEILTVQRDALLQAIQSN
PEIALRMLMVFNTRIQQLHETVHGLVSERAIVRLARLIEYFATESGTEPSPQGQILKIKL
SYYRMARSIGITYEECVRLIKTLKSVVAYSRGGKIIILDVEKLNAIACGQSETITCGT
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctccctagaacaactttcacaaattatggtgtttgtaggtatagaaacctca
gacaaggaaagtttgcaaccttacactcaggtgcaaggctacaaaaaaggagagattatt
ctgcatgagggcgatcgcctgcctgctaagttatatgctgtagttagtggctcaattcaa
gtcaccaaaacagcaaccacaggaaaagaaacgattttgcggggactgaatgctggggaa
attttcgccgcccctgcattgctaggagatagcattgcgcctgcaactgtgactgctgaa
tctgattgtgaaattctcactgtccaacgtgatgctttattacaagccatccaaagtaat
ccagaaattgctttacgaatgttgatggtttttaatactcggattcagcaactccatgaa
acagttcacgggttagtttcggagagggctattgttcgtctggctaggttaatcgaatat
ttcgccacggaatcgggaactgaaccaagtccacaaggtcagattttaaaaatcaagtta
tcttactatcggatggctcgcagcattggtattacctatgaagaatgcgtgcggttaatt
aaaacactcaagtcagttgttgcctatagtcgaggtggcaaaatcattatattggatgtt
gagaaattgaatgcgatcgcctgtggtcagtcagagaccatcacctgtggaacatag
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