Trichormus variabilis: Ava_4983
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Entry
Ava_4983 CDS
T00277
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ava03016
]
Ava_4983
Enzymes [BR:
ava01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Ava_4983
Transfer RNA biogenesis [BR:
ava03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Ava_4983
Prokaryotic type
Ava_4983
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
ABA24580
UniProt:
Q3M356
LinkDB
All DBs
Position
6264084..6264965
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AA seq
293 aa
AA seq
DB search
MQGFINLDKPFGWTSHDCVARLRKMLRLKRVGHAGTLDPAATGVLPIAVGKATRLLQYLP
SDKAYKATVRFGVQTTTDDLQGEIISSQPCGGLSLSEVKTSLSQFIGKIEQIPPIYSAIQ
VEGKRLYDLARKGETIEVPARTVEVFSIDVLDWREGDFPELDVAIACGSGTYIRAIARDL
GAIFHTGGTLAALIRTHSSGFNLTDSLTLTDLETQLQAGTFEPTPADAALQYLPSVTLPS
ISAQKWCQGQRIELNLETVGKVRVYQAETNIFLGIGELQTGVLIPQMVFEPIS
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggttttattaatttagacaaaccatttgggtggacttcccacgactgtgtagca
cggttaagaaaaatgttacgcctcaaacgagtgggacacgcaggaacattagatccagca
gctactggggtgttacctatcgcagttggcaaagctacaaggttattacaatatctgccc
agtgacaaagcttataaagctacagtccgttttggtgtgcagacgacaacagacgatttg
caaggtgaaattattagttctcaaccttgtgggggattgagtttatctgaagtaaaaact
tcgctttcccaatttatcggtaagattgaacaaataccacccatttacagtgcaattcaa
gtagaagggaaacgcttatatgatttggcgcgtaaaggtgaaacaatagaagtgccagcg
cggactgtagaagtttttagtatagacgttttggattggcgggaaggagattttcccgaa
ttggatgtggcgatcgcctgtggtagtggtacatatattagagcgatcgctcgtgattta
ggtgcaattttccacacaggtggaactctcgccgctttgatccgcactcacagcagtggc
tttaatttaacagatagtctcaccttgacggacttagaaactcaactgcaagctgggact
tttgaaccaacccccgccgatgcagctttgcaatatttaccgtcagttaccctacctagc
atctctgcacaaaaatggtgtcagggacagcgaattgaattaaatttagaaactgttggt
aaagtgcgcgtttatcaagcagaaaccaatattttcttgggtattggagaattacaaact
ggtgtgttaattcctcaaatggtgtttgaaccgatttcttaa
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