Trichormus variabilis: Ava_B0261
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Entry
Ava_B0261 CDS
T00277
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ava
Trichormus variabilis
Pathway
ava03030
DNA replication
ava03430
Mismatch repair
ava03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ava_B0261
03430 Mismatch repair
Ava_B0261
03440 Homologous recombination
Ava_B0261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ava03032
]
Ava_B0261
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_B0261
Enzymes [BR:
ava01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Ava_B0261
DNA replication proteins [BR:
ava03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Ava_B0261
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Ava_B0261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DUF5710
DUF5087
Motif
Other DBs
NCBI-ProteinID:
ABA24972
UniProt:
Q3M214
LinkDB
All DBs
Position
A:complement(287874..288587)
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AA seq
237 aa
AA seq
DB search
MKLLIIDTETADNENTPCEISATLYQVGEYSGAIATVSTLIPVEVNNAQAINRISPELTQ
AAHPIYQRSLELLREISAIGDYAVAFNAEFDSQVADKFFPGMVSVPWLCAMRDFDWGYHS
INSHGGYKLTDLALWLGIGISTVHRAGDDVRLLVECLNRHKNLPKLVEDAIILAESPMVE
IKALVSYEDRHKASKAKFAWDGERKIWYKSMRECLLDDFIQSLDFDVSLFRVKTAGR
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atgaagctattaataatagacacagaaaccgcagacaacgaaaatacgccctgtgaaatt
tctgcaacgctctaccaagttggagagtattcgggagcgattgccactgtttcaactttg
attccagttgaagtcaacaacgcccaggcaatcaataggatttccccagaactaacccag
gcggcacatcccatttatcagcgttcgcttgaacttctgcgagaaatatccgcgatcggt
gattatgctgttgctttcaatgctgagtttgattcacaagtggctgacaaattcttccct
ggtatggtttcagttccctggctttgtgcaatgcgcgactttgattggggataccacagc
atcaattcgcatggtggttacaagctgactgacctcgccctttggctggggattggtatc
agcactgtccatcgtgctggggatgatgtgcggttgttggttgagtgtttgaatcgccac
aagaacttaccaaaactggtggaggatgcaattatccttgctgaatccccgatggtagaa
atcaaagcactggttagctacgaagaccgccacaaagcgagtaaggcgaagtttgcgtgg
gatggcgagcgcaaaatttggtacaaatcaatgcgtgagtgtttgttggatgatttcatt
cagtcgcttgattttgatgtaagtttattccgggtgaaaacagcaggtcgttag
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