Trichormus variabilis: Ava_D0015
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Entry
Ava_D0015 CDS
T00277
Name
(GenBank) Histone-like DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ava
Trichormus variabilis
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ava03032
]
Ava_D0015
03036 Chromosome and associated proteins [BR:
ava03036
]
Ava_D0015
03400 DNA repair and recombination proteins [BR:
ava03400
]
Ava_D0015
DNA replication proteins [BR:
ava03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Ava_D0015
Chromosome and associated proteins [BR:
ava03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
Ava_D0015
DNA repair and recombination proteins [BR:
ava03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
Ava_D0015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
HU-CCDC81_euk_1
SIS_2
Lmo2446-like_N
Motif
Other DBs
NCBI-ProteinID:
ABA24680
UniProt:
Q3M2V6
LinkDB
All DBs
Position
extrachrom:12201..12494
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AA seq
97 aa
AA seq
DB search
MNKAELIQAVAAKANVSQKQAETVLNATTDTIVETVANGGKVILVGFGSFEARARKEREG
RNPKTNEKMIIPATTVPAFSPGKHFKTEVTATLPQAG
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagcagaattgatacaagcagttgccgccaaagcaaacgtcagccaaaagcaa
gctgagacagtccttaacgccacaacagacaccatcgttgagacagtcgccaacggtggg
aaagtgatactcgttgggttcggttcgtttgaagctagggctagaaaggagcgtgaagga
cgtaaccccaagacaaacgaaaagatgattatcccagctaccactgtccccgcctttagc
cctggtaagcactttaaaactgaagtcacagctactcttcctcaagccggctga
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