Acinetobacter variabilis: RYU24_23480
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Entry
RYU24_23480 CDS
T07586
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
avb
Acinetobacter variabilis
Brite
KEGG Orthology (KO) [BR:
avb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avb03400
]
RYU24_23480 (sbcC)
DNA repair and recombination proteins [BR:
avb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RYU24_23480 (sbcC)
Archaeal homologous recombinant proteins
RYU24_23480 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
MMR_HSR1
ABC_ATPase
ABC_tran
Slp
AAA_22
NTPase_1
MeaB
AAA_18
Motif
Other DBs
NCBI-ProteinID:
BCT89943
LinkDB
All DBs
Position
2457509..2461120
Genome browser
AA seq
1203 aa
AA seq
DB search
MKIIRLSLNNLASLAGTHHIDFESNPLAHAGLIAITGKTGAGKSTLLDAMCLALYNEIPR
LKGATGSLKDAGGQDVSIKDSKNILRRGCVQGFAELEFIALDQKRYTARWEIRRARQKVD
GNLKVDRAITCLDDQRVLNQKISECTPLIEKLVGLSFEQFTRAVLLAQSEVGAFLKAKDN
ERADLLEYLTNSQIFSLVSQKAFEKHSEVKQKRADLEKLIGHLELLSEEDIAALQQQHTT
LKQVVDHLNQSEKVLENDLKWHRQQHYLYTEIQAKKEVYTVQLDAEQKMAPQKQLLDQLD
QFQQIREQFVQQQQFQKQRSHLLTEQQNFVVEFTSVQQQRDSEQHKLQHIQQQQQQQQYD
FQKIKPYLDQGLKLDHEMLSIGEQYKQLLAEQQTYRTQQIQPVQNQLMQTEQHLQQVQVQ
YHQIQKQLEQQSFLAVFDDEPQATLQRLQDYQELHQKFMRQHPALFQSSRTELEQQQQAL
SASLQELTQRYTHLDQLEQQLQQFQTQQQQLSTQHSKLEALMRTVQQMARLETENLQLNC
DLKSHHDRLKQLETELIQLQQQRQEAEQAFEQLQQVLAQQRLLQAQSVQELRAQLKPNEP
CMVCGSHEHPFVQHQELLENALQQLHDQQLQEAQKKLQQLTQAYQQAQIQQSQLQTLIEQ
HQQRSSQLNTTLQQQKVQLNQDLQQFDLLFDLSQSTDHLQQQLGQHVLQLQQEQQQLAQT
LQNQQSDWKQWRQQQQQLDQLRFSIQQHSQLEQMIQPIVNLLPESLQKSWITDVSSSCQQ
LSQQLQQRQKQSQEFKTLETHMQSLNQQIEKARDQLSLHQQYDAQLQQKMNTALNMGKAL
REQLNHLTLTHAGQIYPKAQEWRDRLEQQQQALDEQLRAQSLMTQQHDQRLQQAELKKQS
FITQIQQLEQQIKQCQQSIQDWQNTHPAFDAEHIQHCLNIDLQQHQQIRQQLQAQHQAVE
NAKTAWDILEEQYQHHLKSKPELSFEEVELRLSSLAQEKAEQENSCNEVATKLRIHANNQ
STLQRYQHQIEQVKAEEYRWGRIYDLIGHKEGTKFQKIAQEHHLDILVEYANQQLQPLAP
RYQLYRIPDSLSLAIIDLDMNSEVRPVLSLSGGETFLVSLALALAIANMASGSMKLESLF
IDEGFGTLDPASLHMVMNALDHLQSQGRKVVLISHVQEMHERIPVQIQVKPVGAGASTIQ
IIG
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattatccgtctgagcctaaataacctcgcctctctcgctggtacacatcatatt
gattttgaatcgaatccactggcacatgccggactgattgcgattaccggaaaaaccggt
gctggtaaatctactctgctcgatgccatgtgcctggcgctgtataacgaaattccacgt
ttaaaaggtgccacaggtagtctgaaagatgcaggtggacaggatgtctcgatcaaggat
tccaaaaatattctgcgccgtggttgcgtacagggttttgccgagcttgagtttattgcc
ttagaccaaaaacgttataccgcacgttgggaaattcgtcgtgcccggcagaaagtggat
ggcaatttaaaggtcgatcgtgctattacctgtctggatgatcaacgcgtgttgaatcag
aaaatttctgaatgcacaccgctgattgaaaaactggtcggcttgagtttcgagcagttt
acccgtgcggttctattagcacagtctgaggttggtgcctttttaaaagccaaagataat
gaacgtgccgatttactcgaatatctgaccaattctcagattttcagtctggtcagccag
aaggcctttgaaaaacacagtgaggtgaagcaaaaacgcgctgatctggaaaaattaatc
ggtcatctggaactgttgtctgaagaagatattgctgctctacagcagcaacacacgact
ttaaaacaggtggttgatcatctaaaccagagcgaaaaagtactggaaaatgacctgaaa
tggcatcgccagcagcattatctctatactgaaattcaggccaaaaaagaagtctatacg
gttcagctggatgctgaacagaagatggcaccgcaaaaacagttattagatcaactggac
cagtttcagcagattcgggaacagtttgtccagcaacagcagtttcagaagcagcgtagc
catttactgactgagcagcaaaactttgttgtcgaattcacctcagttcaacagcagcgt
gatagcgaacagcacaagttgcagcacattcagcaacagcaacaacagcagcaatatgat
ttccagaagatcaaaccttatctggatcagggactcaagctggatcatgaaatgctgtcg
attggcgagcagtataaacagcttctagctgaacagcagacctatagaacccagcagatt
cagcctgttcagaatcagctgatgcagactgagcagcatttgcaacaggttcaggttcag
taccatcagattcaaaagcagctggaacaacagagcttcttagcggtttttgatgacgag
ccacaagcaaccttacaacgcttacaggattatcaggaactgcatcagaaattcatgcgg
cagcacccggcacttttccaatccagccggactgaactggaacagcagcaacaggcttta
tctgccagcttgcaggagctcactcagcgctatactcatctggaccagcttgaacagcaa
ctccaacagttccagacccaacaacagcaactcagtacccagcattcgaagcttgaagct
ttaatgcgaaccgtacagcaaatggctcgcttagaaactgaaaacctacaattaaattgc
gacttaaaaagccatcatgatcgcttaaagcaactagaaactgaacttattcaattacag
caacaacgtcaggaagcagaacaggccttcgaacaattgcaacaagtattggctcagcaa
cgtttattacaggcacaaagtgtgcaggaattacgtgcacagctgaaaccaaatgagcct
tgtatggtctgtggcagtcatgagcatccttttgtacagcatcaggaactgctagaaaat
gctttgcaacagctacatgaccagcagcttcaggaagctcagaaaaaactacagcaactg
actcaggcatatcagcaagcacaaatccagcaatctcaactacaaaccttaattgagcaa
catcagcaacgcagcagtcagctcaatacgacactacaacagcagaaggttcaattaaat
caggatcttcagcaatttgatttgctgtttgatttaagccagagtacagatcatttgcag
caacagcttggtcagcatgtgcttcaacttcaacaagaacaacagcagctagcacaaacc
ctgcaaaatcagcaaagtgactggaaacaatggcgtcagcaacagcaacagctggatcag
ctacgttttagcatacagcagcattcacagttagaacaaatgattcagccgattgttaat
ttactgcctgaatccttgcagaaatcctggattactgatgtctcatcaagctgtcagcag
ttatctcaacaactacaacaacgtcagaaacagtctcaggaattcaaaaccctagagact
cacatgcaaagcttaaatcagcagattgaaaaagcacgtgatcagctcagcctgcatcag
caatatgatgcacagttacagcaaaagatgaatacggcactgaatatgggtaaagcgcta
cgtgaacagctcaaccacctgacccttacccatgccggacagatttatcctaaggcacag
gaatggcgtgaccgtttggagcaacaacaacaggcgttggatgaacagttacgggcacag
agtctgatgacccagcagcatgatcagcgtttacaacaggctgaactgaaaaaacagagt
ttcatcactcagattcagcaactagaacagcagatcaagcaatgccagcaatctattcag
gactggcaaaatacacatcctgcgtttgatgccgagcatatccagcattgcctgaatatt
gacttgcaacagcatcagcaaattcgccagcaattacaggcacaacatcaggcggttgaa
aatgccaaaacggcttgggacattctggaagaacaatatcagcatcatttgaagtccaag
cctgaacttagctttgaagaagttgaactgcgcttaagtagtctggcacaggaaaaagct
gaacaggaaaattcctgtaatgaagtagccaccaaattaagaatacatgccaataaccaa
tcgaccttacaacgttaccagcatcagattgaacaggtcaaagctgaagaatatcgttgg
ggccggatctatgacctgattggccataaggaaggcaccaaattccagaaaatcgcgcag
gaacatcatctagatattctggtcgaatatgccaatcagcaattacagcccctggcgccg
cgttatcagctgtaccggattccagacagtttaagtctggcgattatcgatctggatatg
aacagtgaagtacgtcctgtcctgtcactctctggcggtgaaactttcctggtctctctg
gctctggccttagcgattgccaatatggcttccggctctatgaagctggaatcgctattt
attgatgaaggttttggtactttagacccggcttccttacatatggtcatgaatgcttta
gatcatttacaaagtcaggggcgtaaagtggtgctgatttcacatgtacaggagatgcat
gaacggattccggttcagattcaggttaaaccggtcggtgccggtgccagtactattcag
attataggttaa
DBGET
integrated database retrieval system
