Acinetobacter variabilis: RYU24_27200
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Entry
RYU24_27200 CDS
T07586
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
avb
Acinetobacter variabilis
Pathway
avb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RYU24_27200 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avb03019
]
RYU24_27200 (rne)
03009 Ribosome biogenesis [BR:
avb03009
]
RYU24_27200 (rne)
Enzymes [BR:
avb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RYU24_27200 (rne)
Messenger RNA biogenesis [BR:
avb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RYU24_27200 (rne)
Ribosome biogenesis [BR:
avb03009
]
Prokaryotic type
rRNA processing factors
RYU24_27200 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCT90315
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All DBs
Position
2859839..2863264
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AA seq
1141 aa
AA seq
DB search
MKRMLINATHAEEIRVALVTGQRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYYKADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQL
DLQHLLDLWAQIQSTANSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPLQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGQDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFMLNEKRHSLVYLEQTSNTRVTVLPHPHLETPHY
EISYNPEGFAPTSYERTEATRSSEKELGYESSEWHLEEEHTHTAAPAPAQQQNNGKNNKR
RNNQNQQNVQQAPVAQQVPAQVAAPAASPCAWLENLFVQKQATTVDQSRTANNAAAAIEQ
MVNGGAVSRGQFGQVAPVTPAVSAQPAAVVAPATTGNAYLAPSTVAHKPERDQSEKTERE
EKSQRHNKKARSNKHKESREQAQSDNVSQHQMHEEVVQVSRQEARENKRNSRRQHHNESA
QQSDTHGNEQQQNVPRRDRRNQQRPERPNRHRDPSVLNEQAVPQAPAAVEAPAVNEKQVR
VELVDAPRKEVMPTAMVVNIDEAKSEIVALNDTAPVAKPAVDVTAPADAPVEAPAAEEFL
AEVTASAPAEKAPETQSSSKQRASNDPRQRRRDRRRAAHGQQAKTQQLTPSQVPTLGQYT
IGSLIRHVYGEDCSVLIEQFGLLPTFNRALQKFTQEYNATLATVSTATTEKKPVTRDVEV
SKAQPEAEPAPVLDLTPPAPVSEKRVANDPRERRRLAKLAAEQALQQAKQQAQAEAESTA
AEPAAEATAPAEEAKAENTEAAPAEAPVAAVESADTTEATQTPEPAAEAPVETANAEQAP
VEEATETATAEATPAENEAAPTETPEADKAEETVAKAEKPAARPRRPRGRPPKKTNTATE
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaacacatgccgaagaaattcgcgttgcacttgtcact
ggtcagcgtctttacgatttcgatttagagaatcgtacccgtgaacaaaaaaaatcgaat
atctataaaggtcacgtgactcgcgttgaaccttctttagaagctgtattcgttgaatac
ggcgcaggtcgccaaggcttcctatctatgcgtgaaatcgcaaactcttactacaaagcc
gatcctcgtcaaacttcaaatatccgtgaactgattactgaaggcactgaacttctggtt
caggtggaaaaagaagagcgcggcaataaaggcgctgccctttcaactttcatctcttta
gctggtcgttatctggttctgatgccaaacaacccgaaaggtggcggtatcagccgtcag
atttccggttcagtacgtgaagaactgaaagaaatgctggcttctttaaatgtgccacgt
ggtatgagcgtcattgttcgtacagcaggcattggccgttctcaagaagaactacagctt
gatctgcaacatttactagacctttgggcacaaatccaaagcactgcaaattctggccca
tcgcctatgctggtccatcaggaagcaggtgtggtaactcgtgcgatccgtgattacctg
cgtgatgatgtagcagaaatcctgattgattctgagcaagcctataacgaagcatataac
tttgttaaagcagtaatgccgcttcagttagacaaactgaaaacttatacattgaatgag
cctttgtttgcgcatttcggtatcgaaagccaaatccaaactgcttatgaacgtgaagtg
aaactgccttcaggcggttcgatcgtgatcgaccaaactgaagctttagtttcaatcgat
attaactcagcaaaatcaactcgtggtcaggacgttgaagatacagcgttaaataccaac
cttgaagctgctgaagaaattgctcgtcaattacgtttacgtgatatcggtggcttagtt
gttatcgacttcatcgacatgaccaaagaccgcaaccagcgtatggtagaagcaaaacta
cgtgaagcgactcaaagcgaccgcgcacgtatccagtttggccaactgtctcgtttcggc
ctgatggaaatgagtcgtcaacgtctgcgtccatcattagaagaagcgactggttatgtc
tgcccacgctgtcatggtaccggtatggtgcgtgacttacgttctctctcactttcaatt
atgcgtaaagtggaagaaatcgcgctacgtgaacgtcatggtgaagttcaggttgaagta
ccagtagaaattgcagcattcatgctgaatgaaaaacgtcacagcctggtatatctggaa
caaacttcaaatacacgtgtgactgtacttccacatccacacctggaaacgcctcactac
gaaatttcgtataaccctgaaggtttcgcaccaaccagttacgagcgtactgaagcaacc
cgttcaagcgaaaaagaactgggttatgagtcttctgagtggcatttagaagaagaacat
acgcatactgctgcaccagcacctgctcagcagcaaaacaacggcaaaaacaataaacgc
cgcaataaccaaaatcagcaaaacgtacagcaagcacctgttgcacaacaggtacctgct
caagttgcagcacctgcagccagcccatgtgcatggttagaaaacctgtttgtacaaaaa
caggcaactactgttgatcagtctcgcacagcgaacaatgctgctgctgccatcgaacag
atggtgaatggcggggcagtgagtcgtggtcagttcggccaggttgctcctgtaacacca
gcagtatctgcacagccagcagctgttgtagcaccggcaactaccggcaatgcttatctg
gcgccttcgactgtggcacataaaccagagcgtgaccagtctgaaaaaactgaacgtgaa
gagaaatcacagcgtcataacaaaaaagcacgtagcaacaagcacaaagagtcacgtgaa
caggcgcagtctgataatgtatcacaacatcagatgcatgaagaagtggttcaggtttct
cgtcaggaagcgcgtgaaaacaaacgcaactctcgccgtcagcaccacaacgagtctgca
cagcaaagcgatactcacggcaatgagcaacagcaaaacgtgccacgtcgtgaccgtcgc
aaccagcaacgtccagaacgtccaaatcgccaccgcgatccaagtgttctgaatgagcaa
gctgtacctcaagcacctgctgccgttgaagctccagcagtcaatgaaaagcaagtgcgt
gtagaactggtcgatgctcctcgtaaagaagtgatgccaacagcaatggtggtaaatatt
gacgaggcgaaaagcgaaattgtggcattgaatgacactgctccagtcgcaaaacctgct
gttgatgtgactgcccctgccgatgctcctgtagaagcgccagctgcggaagagttcctg
gctgaagtgactgcatctgctcctgcagagaaagcaccggaaactcagtcatcatcaaaa
cagcgtgccagcaatgacccacgtcaacgtcgtcgtgaccgccgccgtgctgcacacggc
caacaggcgaaaactcagcaattgaccccatcacaggtgccaacacttggccaatacacc
attggcagtctgattcgccatgtttatggcgaagactgttcagtcctgattgaacagttt
ggtctgttgccaacgtttaaccgcgcattgcaaaagttcacgcaggaatataatgcgact
ttagcaacggtttcgaccgcgaccacagagaaaaaacctgtaactcgtgatgtagaagtc
agcaaagcacaacctgaagcagaacctgcacctgtgctggatttaactccgcctgcaccg
gtttcagagaaacgtgtggcgaatgatccacgtgagcgtcgtcgtctcgctaaactggct
gccgagcaagcattacagcaggctaaacagcaagcacaagctgaagcagaatctactgca
gctgaacctgctgcagaagcaacggctccagcggaagaggcgaaagctgaaaatactgaa
gctgcacctgctgaagctccggtagccgcagtagaaagtgctgatacaactgaagcgact
caaactcctgagccagctgctgaagcgcctgtagaaactgcgaacgctgaacaggctcca
gttgaagaagccactgaaacggctacagctgaagcaactccagcagaaaacgaagctgcg
cctactgaaactccggaagccgataaagctgaagaaactgtagcaaaagctgaaaaaccg
gctgcccgcccacgtcgtccacgtggccgtccaccgaaaaaaaccaatactgcaactgag
tcataa
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