Actinomyces viscosus: NCTC10951_00426
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Entry
NCTC10951_00426 CDS
T06789
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
avc
Actinomyces viscosus
Pathway
avc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10951_00426 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avc03019
]
NCTC10951_00426 (rne)
03009 Ribosome biogenesis [BR:
avc03009
]
NCTC10951_00426 (rne)
Enzymes [BR:
avc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC10951_00426 (rne)
Messenger RNA biogenesis [BR:
avc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC10951_00426 (rne)
Ribosome biogenesis [BR:
avc03009
]
Prokaryotic type
rRNA processing factors
NCTC10951_00426 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
VEI14560
UniProt:
A0A448PI25
LinkDB
All DBs
Position
1:463307..466573
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AA seq
1088 aa
AA seq
DB search
MARRTTSESTESHEQDQGHQGLGDAVSAPTPRRRRRATAAAAAPAQAPVAEQPGPVGASE
TVTGSGAGESDIESIEGSGAPAASAPSRRRRKVVAVSAAPQAAPTADPHAAEDEEDEDEA
QVEEEAGAEDAEDPDAQEETDGEPAQASLNEDEAEPEAPRLPAASLLFQAPDPSRARRRR
RVTAATAAPQEAPTASRHQGSSGWTDEEEPQTGVRTSAEDRDADNSDIEDEDESASSSSA
RAGRGGGRSRRRRRAVAGTGAPQQEGRGGSAVDESGDDVDASEADDESPADSSDGSPDDA
REGGARRKRRRGGRGRRSRSRAEDSARSDSDEEAQTPGEGAADATPSARETSADAGVETT
AGAVSGSRRRRRRSRTRSEGGDPRDEVTALKGSTRLEAKRQRRREGRAAGRRRPIVTEAE
FLARRESVDRQMIVRESDGLNQIAVLEDGLLVEHYVSRHTQTSMVGNVYVGRVQNVLPSM
EAAFVDLGKGRNAVLYAGEVNWDAAGLEGRPRRIEDALSSGDTVLVQVTKDPIGHKGARL
TSQITLAGRYLVLVPGGTMTGISRKLPDTERSRLKKILKRIVPDSAGVIVRTAAEGASQE
QLTADVERLVSQWEAIEKKASSVMKGSGKAPVLLKGEPELAVRVIRDVFNEDFRKLIVSG
DKTWSTISRYVDEVSPDLADRLEHWTGPEDVFAAHRVDEQLAKGFDRKVWLPSGGTLVID
RTEAMTVIDVNTGRFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLE
SNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCEHCKGRGFI
VHDEPVENQQVDMSASASRGGGRSRGRKNREEQAGSGRKDAQEAKGKSTKGGGNAKSAKG
AGRADVAGSPETGADDEARAAVRGALAQIAAAAEQAHKEAQQESQEPRDAQEVDGSQGPG
EERAESASDIDNAEGAGGQDEQTSPAESKTARTRARKSAEKKTEKKPSRKTGKKAEKKKP
AKKDGKKAADPEEPDEKAADGRAEAAAGAQTDQEPAGSKPARRTRRRATARSTAPSSENS
SDDAEASA
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcgcaccacatcagaatcaacagaatcgcacgagcaggaccagggacaccag
ggactcggcgacgccgtgagcgccccgaccccgcgccgtcgccgcagagccaccgccgct
gccgccgctcccgcgcaggctcccgtcgccgagcagccgggcccggtgggcgcctcggag
accgtcaccggctccggtgccggcgagtccgacatcgagagcatcgagggctctggggct
ccggccgcctcggccccgtctcgtcgtcgccgcaaggtcgtcgcggtatccgccgccccg
caggcggctccgaccgctgaccctcacgcggccgaggatgaggaggacgaggacgaggct
caggtcgaggaggaggccggcgcggaggatgcggaggatcctgacgcgcaggaggagacc
gacggcgagccggcgcaggcgtccctgaacgaggacgaggctgagccggaggcgccccgc
cttcccgccgcctcgctcctcttccaggcccccgaccccagtcgggcccgccgacgtcga
agggtcaccgccgcaaccgccgctcctcaggaggcgccgaccgcgtcgcgccaccagggc
tcgagcggctggaccgacgaggaggagccgcagaccggcgtccgaaccagtgcggaagac
cgggacgcggacaactcggacatcgaggatgaggacgagtccgcctcgtcctcctcggca
cgagcaggtcgaggcggtgggcgcagccgtcgtcgtcggcgggcggtcgccggcacgggc
gcgcctcagcaggaggggcgcgggggctccgcggttgacgagtccggtgacgacgttgat
gcctccgaggccgacgacgagtctccggctgactcgtcggacggctcgccagatgacgcc
cgtgagggcggggcccgccgcaagcgccgccgcggtgggcgcggtcggcgctcgcgctca
cgtgctgaggactccgcgcgcagcgactcggacgaggaggcccagacccccggggagggc
gctgccgatgcgacgccctcggcgcgcgagacctcggctgacgccggcgtcgagacgacc
gccggggccgtgtccggatcgcgtcggcgccgccgccggtcccgtacccgttccgagggt
ggcgacccgcgtgacgaggtcaccgccctcaagggctccacccggctggaggccaagcgt
cagcgccgccgtgaggggagggcggccggacgccgtcggcccatcgtcaccgaggccgag
ttcctggcccgtcgcgagtccgtggaccgtcagatgatcgtgcgcgagtccgacggcctc
aaccagatcgccgtcctggaggacgggctcctcgtggagcactacgtctcgcggcacacc
cagacctccatggtcggtaatgtctacgtcggccgcgtccagaacgtcctgccctccatg
gaggccgccttcgtggacctgggcaaggggcgcaacgccgtgctctacgccggcgaggtc
aactgggacgccgccggcctggagggaaggccccgccgtatcgaggacgccctctccagc
ggtgacaccgtcctggtccaggtcaccaaggacccgatcgggcacaagggggcccgcctc
accagccagatcaccctggcgggccgctacctggtcctcgtccccggtggcaccatgacc
gggatctcgcgcaagctgcccgatactgagcgcagccgcctgaagaagatcctcaagcgg
atcgtgcccgactccgccggggtcatcgtgcgcaccgccgccgagggagccagccaggag
cagctgaccgcggacgtcgagcgactggtgtcccagtgggaggccatcgagaagaaggcc
tcctcggtcatgaagggcagtggtaaggccccggtcctcctcaagggcgagcccgagctc
gccgtgcgcgtcatccgcgacgtcttcaacgaggacttccgcaagctcatcgtctccggt
gacaagacctggtcgacgatctcccggtacgtcgacgaggtcagtccggacctggccgac
cgcctcgagcactggaccggtccggaggacgtcttcgccgcccaccgcgtcgacgagcag
ctcgccaagggcttcgaccgcaaggtctggctgcccagcggcggcacgctggtcatcgac
cgcaccgaggcgatgaccgtcatcgacgtcaacaccggccgcttcaccggagcgggcggc
acgctggaggagaccgtcacccgcaacaacctcgaggccgctgaggagatcgtgcgccag
ctgcgtctgcgcgacatcggcggcatggtcgtcatcgacttcgtcgacatggtcctggag
tccaaccgggacctcgtcctgcgccggctcgtggagtgcctgggccgtgaccgcacccgc
caccaggtcaccgaggtcacctcgctcggcctggtccagatgacccgcaagcgggtcggg
cagggactggttgaggccttctccaccacctgcgagcactgcaagggtcgtggcttcatc
gtccacgacgagcccgtggagaaccagcaggtcgacatgtcggcctcagcctcccgtggt
ggcgggcgctcgcgcgggcgcaagaaccgtgaggagcaggctggatccggcaggaaggac
gctcaggaggccaagggcaagagcaccaagggcggcggcaacgccaagagcgccaagggc
gccggaagggccgacgtcgcgggctcgcccgagaccggggctgacgacgaggcccgggcc
gcggtccgcggcgccctggctcagatcgcggccgccgccgagcaggcccacaaggaggct
cagcaggagagtcaggagcctcgcgacgcccaggaggtcgacggctcgcagggcccgggc
gaggagcgcgccgagagcgcgagcgacatcgacaacgcggagggcgccggcggccaggac
gagcagacctcgccggccgagagcaagacagccaggaccagggcgcggaagtcggccgag
aagaagactgagaagaagccttcgaggaagaccggcaagaaggctgagaagaagaagccc
gcgaagaaggacggtaagaaggctgccgacccagaggagcctgacgagaaggcggctgac
gggagggctgaggcggctgcgggtgcgcagacggatcaggagcctgctggcagcaagcct
gcgaggagaacgaggaggcgggccaccgcgaggagcactgcgccgtcgtcggagaattct
tcagacgacgcggaggcctccgcctag
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