Actinomyces viscosus: NCTC10951_00692
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Entry
NCTC10951_00692 CDS
T06789
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
avc
Actinomyces viscosus
Pathway
avc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC10951_00692 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avc03019
]
NCTC10951_00692 (deaD)
03009 Ribosome biogenesis [BR:
avc03009
]
NCTC10951_00692 (deaD)
Enzymes [BR:
avc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC10951_00692 (deaD)
Messenger RNA biogenesis [BR:
avc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC10951_00692 (deaD)
Ribosome biogenesis [BR:
avc03009
]
Prokaryotic type
rRNA helicases
NCTC10951_00692 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VEI14816
UniProt:
A0A3S4VCZ8
LinkDB
All DBs
Position
1:complement(762470..765040)
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AA seq
856 aa
AA seq
DB search
MTHSSSTAPGTSDDAQGSESSGPLSLDALFSAELSGGQAAQETVAAPHHSDDAASSPEDF
ATPASSDSPEDPEDVDHEDEADDVDRDRPEADPEDEVDDSDEDDGVDVDEDEVDGHTPFI
DSDADSGDRQQDDREGTTTPKDKHQAPEDRQDDEITFADLGLPGDLLKAVTDMGFVTPTA
IQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRDSVVQALVLAPTRELALQSA
EAITDMAARSRGLDVVAVYGGAPYGPQIGALKGGAQVVVGTPGRVIDLIDKGALQLDDVR
YFVLDEADEMLRMGFAEDVETIAESLPTERRTALFSATMPPAIQAVARQHLHEPVQVEVS
RPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDAEAAIVFVRTKSTAEDVAIELAGRGIQ
AAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVH
RIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGSRLEEITLPSPADVSEHRARKLLSKA
AARHERGRLDMYLPLVSSSARELDIDVEELAATLLALAVGDEGPRRREDRDRGERPQRAR
REENLDSEGTFLSASFEGGREKNRRSDRGDRGEGRRSAARSGRREHEGPGTVYRIEVGHR
DRVLPGAIVGALANEGGIEGSDIGKIDILQSFSLVTIYADLSPEQLSVMGRATFAGRELR
IRPDEGPGHGWSGPNGGERRPKRRDWEDRGERGERSGRSDRGFRPRHDDRRDDGDRGWRD
RDGRGGRGGYDRSDRGDRRDNRRWDDRRGDRDGFRGRREDRGDRGNSRGYGDRNQNRFGG
NRGDHRGGFRGGRGDR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgactcactccagcagtactgcacccggtacctcagacgacgctcagggcagcgagagc
agcggtccgctcagcctcgacgccctcttctccgccgagctctccggcggtcaggcggcc
caggagactgtcgccgcgccgcaccactccgacgacgccgcatcctctcccgaggacttc
gccacccccgcctcctcagactccccggaggaccctgaggacgtcgaccacgaggacgag
gccgacgacgtcgaccgggaccgccccgaggccgacccggaggacgaggttgacgactcc
gatgaggacgacggtgtcgacgtcgatgaggacgaggttgacggtcacacccccttcatc
gactccgacgctgactccggtgaccgccagcaggacgaccgcgagggcaccaccacgccg
aaggacaagcaccaggcgccagaggaccggcaggacgacgagatcaccttcgccgacctg
ggacttcccggtgacctgctcaaggccgtcaccgacatgggcttcgtgaccccgaccgcc
atccagaaggaggcgatcccggtcttgctcgccggccgtgacgtcgtcggcgtcgcccag
accggaaccggtaagacggcggccttcgggctgccgctcctggacgccgtcgactcgcgc
gacagcgtggtccaggcccttgtcctggcccccacccgcgagctcgccctccagagcgcc
gaggccatcaccgatatggccgcccgctcccggggcctggacgtggtggccgtctacggg
ggcgccccctacggcccccagatcggtgcgctcaagggcggcgcccaggtcgttgtcggt
acccccggacgcgtcatcgacctcatcgacaagggcgctcttcagctcgatgacgtgcgc
tacttcgtcctggacgaggccgatgagatgctgcgcatgggcttcgccgaggacgtcgag
acgatcgcggagtctcttcccaccgagcgtcgcaccgccctgttctccgcgacgatgcct
ccggccatccaggccgtggcgcgtcagcaccttcacgagcccgtccaggtcgaggtctcg
cggccggcgtccaccgtcgccaccgtgcaccagacctacgcggtggttcccttccgccac
aagatcggcgccgtctcccgcgtcctggccgtcaccgacgccgaggccgccatcgtcttc
gtgcgaaccaagtccacggccgaggacgtggctatcgagctggccggccgaggcatccag
gccgccgcgatctccggtgacgtcccccagcgtgagcgcgagcgcctggtcgagcgtcta
cgcgccggcaccctcgacgtgctggtggcaaccgacgtggctgcccgagggctggacgtg
gaccgtatcggactggtcgtcaacttcgacgtgccccgcgaggccgaggcctacgtgcac
cgcatcggtcgtacagggcgcgccggccgccacggtgaggccgtcaccttcctgactccc
aaggagaagggcaagctccgccagatcgagcgcctcaccggcagccggctggaggagatc
accctgccctcccccgccgatgtctccgagcaccgggcgcgcaagctgctgtccaaggcc
gctgcccgccacgagcgcggccgcctggacatgtacctgccgctggtgagtagctccgcc
cgggagctggacatcgacgtcgaggagctggcggccacgctgctggccctggccgtaggt
gatgagggaccgcgcaggcgggaggaccgcgaccgcggcgagcgtccccagcgtgcgcgc
cgggaggagaacctggactccgaggggaccttcctgtcggcctccttcgagggcggacgc
gagaagaaccgtcgctccgaccgtggggaccgaggcgaaggacgccgttcggccgcgcgc
tccgggcgccgcgagcacgagggtcccgggaccgtgtaccggatcgaggtgggccaccgc
gaccgggtccttcccggcgcgatcgttggcgccctggccaacgagggcggcattgagggc
tccgacatcggcaagatcgatatcctccagtccttctcactggtgacgatctatgccgac
ctgagccccgagcagctctccgtcatggggcgggcgaccttcgccggtcgcgaactgcgg
atccgccccgacgagggcccgggccacggctggtccggccccaacggcggggagcgtcgc
cccaagcggcgcgactgggaggaccgcggtgagcgcggcgagaggtcgggacggtcggac
cgcggattccggccccgccatgacgaccgccgcgatgacggtgaccgtggttggagggac
cgtgacggacgcggtggcagaggcggctatgaccgttcggatcgcggcgatcgccgtgac
aaccgccggtgggacgaccgccgcggcgaccgcgacggcttccggggtcggcgtgaggac
cggggcgaccgtggaaacagccgcggctatggcgaccgtaaccagaaccgctttggcggt
aaccggggtgatcaccgaggcggcttccgaggaggacgcggcgatcgctga
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