Azotobacter vinelandii CA6: AvCA6_01100
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Entry
AvCA6_01100 CDS
T02634
Name
(GenBank) ECF sigma factor, FecI family
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AvCA6_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avd03021
]
AvCA6_01100
Transcription machinery [BR:
avd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AvCA6_01100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
HTH_23
Sigma70_r4
GerE
HTH_11
HTH_VMAP-M9
HTH_38
HTH_28
HTH_Tnp_4
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
AGK19084
LinkDB
All DBs
Position
112066..112596
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AA seq
176 aa
AA seq
DB search
MSTPDTSYPQQVADYYAEHHGWIRAWLHRKLGNACDAADLAHEVFLRLLARPRRFDSDGH
ARAYLHGMSHHVCVDFWRRRQVEQAWLEVLASRPETFAPSEEYRAIVLEALQQVHAMLSR
LPERVAEAFLLAQLQGLGYKAIGERLGVSERTVTKYMAQAMYQCLLLEAELDEALV
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccccgatacttcctatccgcaacaggtagcggactactatgccgagcaccat
ggctggatacgcgcctggctgcaccggaaactgggcaacgcctgcgacgccgccgacctg
gcccacgaggtgttcctgcggttgctggctaggccgcgccggttcgacagcgacggccat
gcgcgcgcctatctgcacggtatgtcccatcatgtctgcgtggatttctggcggcgccgg
caggtcgagcaggcctggctggaggtcctggccagtcgtcccgaaaccttcgcgccttcg
gaagagtaccgggcaatagtgctggaggccctgcagcaggtgcacgcgatgctctcccgc
ctgccggagcgggtcgccgaggccttcctcctggcccagctccagggactgggctacaag
gccatcggcgaacgcctgggggtgtccgaacggaccgtgaccaagtacatggcccaggcg
atgtaccagtgcctgctgctcgaggccgaactcgatgaagccctcgtctga
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