KEGG   Azotobacter vinelandii CA6: AvCA6_07540
Entry
AvCA6_07540       CDS       T02634                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
avd  Azotobacter vinelandii CA6
Pathway
avd02024  Quorum sensing
avd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:avd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AvCA6_07540 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AvCA6_07540 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:avd03019]
    AvCA6_07540 (hfq)
   03036 Chromosome and associated proteins [BR:avd03036]
    AvCA6_07540 (hfq)
Messenger RNA biogenesis [BR:avd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AvCA6_07540 (hfq)
Chromosome and associated proteins [BR:avd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AvCA6_07540 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AGK18073
UniProt: M9YG25
LinkDB
Position
713095..713349
AA seq 84 aa
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPTASEGEQPEPGNA
NT seq 255 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcattcgctacaagacccttaccttaataccctgcgtaaagagcgcgtt
ccggtttccatctatctggtcaatggcatcaagctgcagggccagatcgagtccttcgac
cagttcgtgattctgctgaagaacactgtcagccagatggtctacaagcacgcgatttcc
accgtggtgccgagccgtcccgtgcgtctgcccaccgcgagcgagggcgagcagcccgaa
cccggcaacgcctga

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