Azotobacter vinelandii CA6: AvCA6_07540
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Entry
AvCA6_07540 CDS
T02634
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd02024
Quorum sensing
avd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA6_07540 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AvCA6_07540 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avd03019
]
AvCA6_07540 (hfq)
03036 Chromosome and associated proteins [BR:
avd03036
]
AvCA6_07540 (hfq)
Messenger RNA biogenesis [BR:
avd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
AvCA6_07540 (hfq)
Chromosome and associated proteins [BR:
avd03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
AvCA6_07540 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AGK18073
UniProt:
M9YG25
LinkDB
All DBs
Position
713095..713349
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AA seq
84 aa
AA seq
DB search
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVRLPTASEGEQPEPGNA
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcattcgctacaagacccttaccttaataccctgcgtaaagagcgcgtt
ccggtttccatctatctggtcaatggcatcaagctgcagggccagatcgagtccttcgac
cagttcgtgattctgctgaagaacactgtcagccagatggtctacaagcacgcgatttcc
accgtggtgccgagccgtcccgtgcgtctgcccaccgcgagcgagggcgagcagcccgaa
cccggcaacgcctga
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