Azotobacter vinelandii CA6: AvCA6_07620
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Entry
AvCA6_07620 CDS
T02634
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA6_07620 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avd03019
]
AvCA6_07620 (rnr)
03016 Transfer RNA biogenesis [BR:
avd03016
]
AvCA6_07620 (rnr)
Enzymes [BR:
avd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AvCA6_07620 (rnr)
Messenger RNA biogenesis [BR:
avd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AvCA6_07620 (rnr)
Transfer RNA biogenesis [BR:
avd03016
]
Prokaryotic type
tRNA degradation factors
AvCA6_07620 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
AbiEi_4
LexA_DNA_bind
HTH_20
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGK18699
UniProt:
M9YDY5
LinkDB
All DBs
Position
720272..722857
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AA seq
861 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILQRLDERGAPASREELAEEFGLHEEEQLEALR
RRLRAMERDGQLIHTRRGTYAPVDKLDLVLGRVSGHRDGFGFLIPDDGSDDLFLSPMQMR
LLFDGDRALARVSGFDRRGRREGAIVEVVSRAHESIVGRYYEESGIGFVIPDNPKIQQEV
LVTPGRTANASVSQFVEIRITHWPTLRFQPQGDIIEVIGNYMAPGMEIEVALRSYDIPHV
WPEAVLKESRKLKPEVDEKDKLKRIDLRHLPFVTIDGEDARDFDDAVYCEKSLLAPFAGG
YRLYVAIADVSHYVRVGSALDEEASRRGNSVYFPERVVPMLPEELSNGLCSLNPQVDRLA
MVCEMTLSRAGKMTDYQFYEAVIHSHARLTYNRVSAMLEQPKSPEGKRLRSIYAGVLPHL
KQLHSLYKVLVKARQARGAIDFETQETRIVFGTGRKIAEILPTERNDAHKLIEECMLCAN
VATAAFLQKHELPGLYRVHDGPPAERLEKLKAFLGELGLSLHRSKDGPTPKDYQMLLESI
QGRADFHLIQTVMLRSLSQAVYSAENRGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKRETPHVRRAGATSMPKARIYPYDEAALEQLGESCSMTERRADEATRDVVNWLKCEFM
QDRVGERFEGVISAATGFGIFVELKDIYVEGLVHVTALPADYYHFDPVHHCLSGERSGRS
FRLGDSVVVQVMRVDLDERRIDFELIEGGRGRMAGRRRDSEPPEEPVEERAVKGPGKRAK
EDKAKGLAPLASELLAQAEAMLGNTDVKRSRATKQALLAEAKDAKTERRKTAKAPAGKSS
AKQSKPAGRGPSRKGRSKAGT
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaagtctcgatcccgaggccgcccgcgaggcggaaaagtacgataac
cccattcccagtcgcgagctgatcctgcagcgtctcgacgagcgcggcgcccccgccagt
cgcgaagagctggccgaggagttcggcctgcacgaagaggagcagctcgaggcactgcgc
cggcgtttgcgtgccatggagcgcgatggccagttgatccatacccgtcgcggcacctat
gcgccggtggacaagctcgatctggtgctcggccgggtcagcggtcaccgcgacggcttc
ggcttcctgattcccgacgacggcagcgacgacctcttcctcagtccgatgcagatgcgc
ttgctgttcgacggcgaccgcgccctggcgcgggtgtccggcttcgaccggcgggggcgc
cgcgagggcgccatcgtcgaagtggtttcgcgggcccatgaaagcatcgtcggccgctac
tacgaggagagcggcatcggcttcgtgattcccgacaacccgaagatccagcaggaggtg
ctggtcaccccggggcgtacggccaacgcctcggtcagtcagttcgtcgagatccgtatc
actcactggccgaccctgcgcttccagccgcagggcgacatcatcgaggtgatcggcaac
tatatggcgccgggcatggagatcgaggtcgccctgcgcagctatgacatcccccatgtc
tggccggaggccgtgctcaaggagtcgcgcaagctcaagcccgaggtggatgagaaggac
aagctcaagcgcatcgacctgcgccacctgcctttcgtcaccatcgacggcgaggatgcc
cgcgacttcgacgacgcggtctattgcgagaagagcctgctggccccattcgccggaggt
taccgcctctacgtggcgatcgccgacgtttcccattacgtcagggtcggttcggcgctc
gacgaggaggccagccgccgcggcaactcggtgtatttccccgagcgagtggtaccgatg
ctgccggaggagctgtccaacggactctgctcgctcaacccgcaggtcgaccggctggcg
atggtctgcgagatgaccctgtcgcgcgccggcaagatgaccgactaccagttctacgag
gcggtcatccattcccatgcccgactgacttacaaccgcgtcagcgccatgctggagcag
ccgaagagccccgaaggcaagcggctgcgcagcatctatgccggggtgctgccgcacctc
aagcaactgcattcgctctacaaggtgctggtgaaggcgcgtcaggcgcgtggcgccatc
gacttcgaaacccaggaaacgcgcatcgtcttcggcaccgggcgcaagatcgcggaaatc
ctgccgaccgagcgcaacgatgcgcacaagttgatcgaggagtgcatgctctgcgccaac
gtggcgaccgccgcgttcctgcagaagcacgagttgccgggcctctaccgggtacacgat
ggcccgccggcggagcgcctggagaagctcaaggccttcctgggcgaactgggcctgagc
ctgcatcgcagcaaggacggcccgaccccgaaggactaccagatgctgctggagtcgatc
caggggcgagcggatttccacctgatccagacggtgatgctgcgctcgctgagccaggcc
gtgtacagcgccgagaaccgcggccacttcggcctgaactacgaggcctatacccatttc
acctcgcctatccggcgctatccggatcttctggtgcaccgtgcgatccgtagcgtgatc
cgttccaagcgcgagacgccgcatgtccgccgcgcgggggcgacgagtatgcccaaggcg
cgcatctatccctacgacgaagccgccctggagcaactcggcgagtcctgctcgatgacc
gagcggcgagccgacgaggcgacccgcgacgtggtcaactggctgaagtgcgagttcatg
caggatcgcgtcggcgagcgcttcgagggggtgatttcggcggcgaccggcttcggcatc
ttcgtcgagttgaaggacatctacgtcgaggggctggtgcacgtcaccgcattgccggcc
gactactaccacttcgatccggttcatcattgcctgtccggggagcgcagcgggcgcagc
ttccgtctcggcgacagcgtggtcgtgcaggtgatgcgggtcgatctggacgagcggcgg
atcgatttcgagctgatcgagggcggccgcggacgaatggccgggcgtcggcgtgactcc
gagccgccggaagagccggtcgaggagcgcgccgtgaaggggccgggcaagcgcgccaag
gaggacaaggccaaggggctggcgccgctggcttccgaactgctggcccaggccgaggcc
atgctcggcaataccgacgtgaagagaagccgggcgaccaagcaggccttgctggccgag
gccaaggacgccaagacggagcgccggaagacggccaaggctcctgccgggaagagcagc
gccaagcagtccaaaccggccggcaggggaccctcccgcaagggccggagcaaggccggg
acatga
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