Azotobacter vinelandii CA6: AvCA6_12790
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Entry
AvCA6_12790 CDS
T02634
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd02020
Two-component system
avd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AvCA6_12790 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AvCA6_12790 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avd03021
]
AvCA6_12790 (rpoN)
Transcription machinery [BR:
avd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AvCA6_12790 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AGK18743
UniProt:
M9YI03
LinkDB
All DBs
Position
complement(1245485..1246951)
Genome browser
AA seq
488 aa
AA seq
DB search
MTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLERQEDAEDYDSPDMLGEHGDQSTLDTT
PGSYQEGYESGAASEDGGTLEEGDWHERIPSELPVDTAWEDIYQTSASNLPSTDEDEWDF
TTRTSTGESLQSHLLWQLNLTPMSDTDRLIAVTLIDSINSDGYLEAALEEILASLDPELG
VELDEVEMVLRRIQQFEPAGIAARDLSESLLLQLRQLPPDTPWLEEAKRLAKDYLDLLGN
RDFTQLMRRMKLKEEELRPVIELIQSLNPRPGAQIESSEPEYVVPDVIVRKHNDRWLVEL
NQEAVPRLRINPHYAGFIRRADASADNTFMRNQLQEARWFIKSLQSRNETLMKVSTQIVE
HQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVST
AEGGECSSTAIRAIIKKLIAAENPKKPLSDSKIAGLLEEQGIQVARRTVAKYRESLSIAP
SSERKRLM
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgcagctgcaacaagccatccgtctgcttcaactgtcgaccctggatctgcag
caggaaatccaggaggccctcgactccaatcccatgctggaacgtcaggaggacgccgag
gactacgacagcccggatatgctgggcgagcatggagaccagtcgacgctcgacaccacg
cccggctcttaccaggaaggctacgagagcggggcggccagcgaggatggcggtaccctc
gaagagggcgactggcacgagcggattcccagcgagctgccggtggataccgcctgggaa
gacatctaccagaccagtgccagcaacctgccgagcaccgatgaagacgagtgggacttc
accacccgcacctccacgggcgagagcctgcagagccatctgctctggcagttgaacctg
accccgatgtcggataccgatcgcctgatcgccgtcactctgatcgacagcatcaacagc
gacggctatctggaggccgccctggaggaaatcctcgcctctctggacccggaactggga
gtcgaactcgacgaagtggaaatggtgctgcgccgcatccagcaattcgaaccggccggg
atcgctgcccgcgacctcagcgaatcgctgctgctgcaactgcgccagctaccgcccgat
accccctggctggaagaggcgaaacgactggccaaggactatctcgacctgctgggtaac
cgcgacttcacccagttgatgcgacgcatgaaactcaaggaagaagaattgcgtccggtg
atcgagctgatccagagcctcaaccctcgtcccggggcccagatcgagagcagcgagccc
gaatatgtcgtgcctgacgtcatcgtgcgcaagcacaacgaccgctggctggtggagctc
aatcaggaggcggtgccgcgcctgcgcatcaacccgcattacgctggcttcatcagacgc
gccgacgccagcgccgacaacaccttcatgcgcaaccaactgcaggaggcgcgctggttc
atcaagagcctgcaaagtcgcaacgaaaccctgatgaaggtttcgacccaaatcgtcgag
caccagcgcggctttctcgactacggcgaagaggccatgaaaccgctggtgctgcacgat
atcgccgaggctgtcggcatgcacgaatcgaccatctccagggtcaccacccagaaatac
atgcacactccacgcggtatttacgagctgaagtacttcttttccagtcacgtcagtacc
gccgaaggcggtgagtgctcgtccacggccatccgcgccatcatcaagaaattgattgcg
gcggaaaatccgaaaaagccattgagcgacagcaagatcgctggtttactggaagaacaa
ggcatacaggtggctcgccgtacagttgccaaataccgggaatcgctcagtattgcgcct
tccagcgaacgcaagcggcttatgtaa
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