Azotobacter vinelandii CA6: AvCA6_15880
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Entry
AvCA6_15880 CDS
T02634
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
avd
Azotobacter vinelandii CA6
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avd03032
]
AvCA6_15880 (ihfB)
03036 Chromosome and associated proteins [BR:
avd03036
]
AvCA6_15880 (ihfB)
03400 DNA repair and recombination proteins [BR:
avd03400
]
AvCA6_15880 (ihfB)
DNA replication proteins [BR:
avd03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
AvCA6_15880 (ihfB)
Chromosome and associated proteins [BR:
avd03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
AvCA6_15880 (ihfB)
DNA repair and recombination proteins [BR:
avd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
AvCA6_15880 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-DNA_bdg
HU-CCDC81_euk_2
CATASP
Motif
Other DBs
NCBI-ProteinID:
AGK18127
UniProt:
M9YIB1
LinkDB
All DBs
Position
1564229..1564507
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AA seq
92 aa
AA seq
DB search
MTKSELIERIVTQQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV
GRNPKTGQTVRLDGKFVPHFKPGKELRDRVNE
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagtcggagttgatcgagcgcatcgtcactcagcaggggcagttgtccgcaaag
gatgtggaactggccatcaagaccatgctggagcaaatgtcgcaggctctggccaccggg
gatcgcattgaaatccgcggtttcggcagtttctcgctgcactatcgggcgccacgcgtc
ggccgcaatccgaaaaccggacagaccgttcgcctcgatggcaagttcgtgccgcatttc
aaacccggcaaggagctacgcgatcgcgtcaatgaatga
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