Azotobacter vinelandii CA6: AvCA6_32800
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Entry
AvCA6_32800 CDS
T02634
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA6_32800 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avd03019
]
AvCA6_32800 (recQ)
03400 DNA repair and recombination proteins [BR:
avd03400
]
AvCA6_32800 (recQ)
Enzymes [BR:
avd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AvCA6_32800 (recQ)
Messenger RNA biogenesis [BR:
avd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AvCA6_32800 (recQ)
DNA repair and recombination proteins [BR:
avd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AvCA6_32800 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
HTH_29
HTH_20
HTH_23
ResIII
HTH_28
HTH_7
GerE
Transposase_mut
DUF433
PAX
Motif
Other DBs
NCBI-ProteinID:
AGK18641
UniProt:
M9Y9W0
LinkDB
All DBs
Position
complement(3358512..3360635)
Genome browser
AA seq
707 aa
AA seq
DB search
MLEQAQRILKEVFGYDAFRGNQAAIIERVARGGDALVLMPTGGGKSLCYQVPALLREGLA
VVVSPLIALMEDQVATLDELGVPAVALNSTLSLDEQREIAERIRQGGIKLLYLAPERLVQ
PRMLAFLQRLPIGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRIALTATADKRT
REEIVQRLHLENAERFLSSFDRPNIFYRIVAKDQPRKQLLGFLAERRGDAGIVYCMSRKK
VEELAAFLSEQGFPALPYHAGLSNELRTLHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVIFLKQMLNNSEGDERHKRIEQHK
LDAMLALCEETRCRRQALLAYFDEELAKPCGHCDNCVDGVQTWDATEAARQALSAIYRSG
QRYGVGHLVDILLGRDNDKVRGLGHQHLSVFGVGKAHGEGEWRTLFRQLVARGLADVDLD
GYGGLRLNQGCRALLRGEVRLELRRDLKPQAPRPTASAASQLVRHDEREQWEALRTLRRR
LAEEHSVPPYVIFPDATLLEMLRSRPRSLSEMARVNGVGARKLERYGEAFLEVLNRSAGA
PKPVTDLRHELVSLARAGMTPAQIARQLDCTEKNVYSLLAEAIVRRQLTLEQALDLPEEL
LGEIHDAFLDGDGELPPVAALAEQFGERVPQGVLHCVRAALQTELDP
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggcccagcgcattctcaaggaagtcttcggctacgatgcgtttcgtggc
aaccaggcggcgatcatcgaacgcgtcgctcgtggcggcgatgccctggtgctgatgccg
accggtggtggcaagtcgctttgctaccaggtgccggcactgttgcgcgaggggttggcg
gtggtggtttcgccgctgatcgcgctgatggaggaccaggtcgccaccctcgacgaactg
ggcgtgccggcggtggcgctgaattccacgctgagcctcgacgagcagcgcgagatcgcc
gagcggatccgtcagggcgggatcaagctgctctatctggccccggagcgtctggtgcag
ccgcgcatgctggccttcctgcagcgcctgccgatcggcctgttcgccatcgacgaggcg
cactgcgtgtcccagtgggggcacgatttccgtcccgaatacctgcaactcggccaactc
gccgaactcttcccgcaggtgccgcgcatcgccctgaccgccacggcggacaagcgcacg
cgcgaggaaatcgtccagcgcctgcatctggaaaacgccgagcgctttctttccagtttc
gaccggccgaatatcttctaccgcatcgtcgccaaggatcagccgcgcaagcagttgctc
ggctttctcgccgagcgccgcggcgacgccgggatcgtctactgcatgtcgcgcaagaag
gtggaggaactggccgccttcctctccgagcagggttttccggccctgccgtaccacgcc
ggactgtccaacgagctgcgcaccctgcatcagaagcgcttcctcaacgaggaagggctg
atcatggtggcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtc
gcccatctcgacctgcccaaatcgctggaggcctattaccaggaaaccggccgggccggg
cgcgacggcctgccggcggatgcctggatggcctatggcctgcaggacgtcatcttcctc
aagcagatgctcaacaattccgaaggcgacgagcggcacaagcgcatcgagcagcacaag
ctcgacgccatgctggcgttgtgcgaggaaacccgctgccgccgccaggcgctgctggcc
tatttcgacgaggaactggccaagccctgcggccactgcgacaactgcgtcgacggcgtg
cagacctgggatgccacggaggccgcccgtcaggcattgtcggccatctaccgcagcggc
cagcgctatggcgtcggccatctggtggatatcctgctcggccgcgacaacgacaaggtg
cgcggcctgggccaccagcatctatcggtgttcggtgtcggcaaggcgcatggcgagggg
gaatggcgcaccttgtttcgccagttggtcgcccgcggactggccgatgtggatctggat
ggctatggcggcctgcgtctgaaccagggctgccgggcgctgctgcgtggcgaagtgcgc
ctggagctgcgccgcgacctcaagccgcaggcgccacggccgacggccagcgccgccagc
cagttggtccggcacgacgagcgcgaacagtgggaggcgctgcgtacactgcgccgcagg
ctggcggaagagcactcggtgccgccttacgtgatctttcccgatgccacgctgctggaa
atgctgcgcagccggccgcgctcactgtccgagatggcgcgggtcaatggcgtcggtgca
cgcaagctggagcgctatggcgaggccttcctcgaggtactgaacaggtccgccggggcg
ccgaaaccggtgaccgatctgcgtcacgaattggtcagtctggcgcgtgccggcatgacg
ccggcgcagatcgcccgtcaactggactgcaccgaaaaaaatgtctatagcctgctggcc
gaggccatcgttcgtcgccagctcacgctcgaacaggcgctcgacctgcccgaggaactg
ctgggcgagatccatgacgcctttctcgacggcgatggcgagctgccgccggtcgcggcg
ctggccgagcagttcggcgaacgggtgccgcagggcgtgctgcattgcgtgcgtgcggcc
ctgcagaccgaactcgatccttga
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