Azotobacter vinelandii CA6: AvCA6_38840
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Entry
AvCA6_38840 CDS
T02634
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd03030
DNA replication
avd03430
Mismatch repair
avd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AvCA6_38840 (dnaE)
03430 Mismatch repair
AvCA6_38840 (dnaE)
03440 Homologous recombination
AvCA6_38840 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avd03032
]
AvCA6_38840 (dnaE)
03400 DNA repair and recombination proteins [BR:
avd03400
]
AvCA6_38840 (dnaE)
Enzymes [BR:
avd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AvCA6_38840 (dnaE)
DNA replication proteins [BR:
avd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AvCA6_38840 (dnaE)
DNA repair and recombination proteins [BR:
avd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AvCA6_38840 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGK17776
UniProt:
M9Y792
LinkDB
All DBs
Position
complement(3927953..3931483)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSVSFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGG
VKPICGADIWLASAEPDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGDGLVIIQRDW
VKEAAEGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEVQRTGRVGDEE
YLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRRPRNYSDQQYL
KTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTIDDYLRQVAYEG
LEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLIVMDFIKWAKNNGVP
VGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDY
VADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQ
EEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTDFAPIACDADGGGL
VTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGETELVDIDRIALDDKAT
YALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPGPLQSGMVDDFINRKH
GRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKK
PEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKT
RYPAPFMAAVLSADMHNTDKVVTLIEECRSMKLRIVAPDVNNSEFMFTVDDEGRIVYGLG
AIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEALIRGGALDRLGPYFA
DEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGGLFAEPEADVYANHRN
ARELSLKDRLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELRPARELQTIAGLIVNL
RVMKNKKGDKMGFITLDDRSARIEASLFADAFAGAQALLQTDALVVVEGEVSNDDFSGGL
RLRAKRVMSLEEARTGLAESLRLRVASEALEGDRLRWLAELCSRYRGACPITLDYIGREA
RALLQFGEAWRIDPADSLIQTLRDQFGKDNVFLHYR
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtttccttcgtccacctgcgcgtgcacaccgagttttccctggtcgacggcctg
gtacgggtcaagccgctgatcaaggccgtggccggggctggcatgcccgcggtggcggtc
accgaccagagcaacatgtgctcactggtgaagttctacaaggcggccatggcgggtggg
gtcaagccgatctgcggcgccgatatctggctggccagcgccgagcccgatgctccgctg
tcgcgcctgaccctgctggcgatggatgccaagggttaccgcaacctcaccgagctggtt
tcccggggctggaccgagggtcagcacggcgatggcctggtgatcatccagcgcgactgg
gtgaaggaggccgccgaaggggtgatcgccctgtccggggcgaaggaaggggagatcggc
caggcgctgctcaacggccatgtcgaccaggccgcagcgctgctcgaggagtggctggcg
gtgtttcccgagcgcttctatctggaagtgcagcgtaccggccgggtcggcgacgaggag
tacctgcatgccgccgtcgaactggccgatcgctacggcgctccgctggtggcgaccaac
gacgtgcgctttctcaagcaggaggacttcgaggcccacgagacccgcgtctgcatcggc
gagggacgcaccctcggcgacccgcggcggccgcgtaactactccgaccagcagtacctg
aagaccccggcggagatgtgggagctgttttccgacctgcccgaagcgctggagaacagc
gtggagatcgcccggcgctgcaacatcgaagtgcgcctcggcaagtacttcctgcccaac
ttcccggtgccggccggcatgaccatcgacgactacctgcgccaggtggcctacgagggg
ctggaggagcgtctggcggtgctctggccgcaggagaccacgcccgactacgcggataag
cgcgaggtctacgtcgagcgtctggagttcgagctgaacaccatcatccagatgggcttt
cctggctacttcctgatcgtgatggacttcatcaagtgggcgaagaacaacggcgtgccg
gtcggtcccggccgcggctccggcgccggctcgctggtcgcctacgcgctgaagatcacc
gacctcgatcccctggcctacgacctgctgttcgagcgcttcctcaaccccgagcggatc
tccatgcccgacttcgacgtcgacttctgcatggacggccgcgaccgggtcatcgactac
gtggccgacacctacgggcgcaacgccgtgagccagatcatcaccttcggctcgatggcg
gccaaggcggtggtgcgcgatgtggcgcgggtgcagggcaagtcctacgggctggccgac
cgcctgtcgaagatgatccccttcgaggtcggcatgaccctggagaaggcctacgagcag
gaggagatgctccgcgagttcctcaagaacgacgaggaggcccaggagatctgggacatg
gccctgaagctcgagggcatcacccgcggcaccggcaagcacgccggcggcgtggtgatc
gcgccgaccaagctcaccgatttcgcgcccatcgcctgcgatgcggacggcggcggcctg
gtcacccagttcgacaaggacgacgtggaggcggccggcctggtcaagttcgacttcctc
gggctgcgcaccctgaccatcatcaagtgggcgatggaaaccatccaccgcgagcagcgg
cgccggggcgaaaccgaactggtggacatcgaccgcatcgcgctggacgacaaggccacc
tacgcgctcctgcagagggccgagaccaccgcggtgttccagctcgaatcgcgcggcatg
aaggaactgatcaagaagctcaagcccgacaacatcgaggacatgatcgcgctggtcgcg
ctgttccgcccgggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcat
ggccgcgcggagctttcctacccgcaccccgattaccagtacgcgggcctggagccggtc
ctgaaacccacctacggcatcatcctgtatcaggagcaggtgatgcagatcgcccaggtg
atggccggctacaccctcggcggcgcggacatgctgcgtcgcgccatgggcaagaagaag
cccgaggaaatggccaagcagcgcggcggcttcgtcgaaggctgcgcgaagaatggcatc
gatgccgagctggcgggcaacatcttcgatctggtggaaaagttcgccggttacgggttc
aacaagtcgcactcggccgcctatggcctggtttcctaccagacggcctggctgaagacc
cgttatccggcgcccttcatggccgcggtgctttccgcggacatgcacaacaccgacaag
gtggtgaccctgatcgaggaatgccgcagcatgaagctgcgcatcgtggcgccggacgtg
aacaactccgagttcatgttcaccgtcgacgacgaggggcgcatcgtctacggcctgggg
gcgatcaagggcgtcggcgaggggccggtcgaggccatcgtcgaatgccgcgccgccggc
ggtcccttcacggatctgttcgacttctgcgcgcgggtcgatctcaagcggatcaacaag
cgtaccctcgaggcgctgatccgtggcggcgcgctggaccgcctgggaccgtacttcgcc
gacgagcccaaggcctaccaggccaacatcgaccgcaaccgggcggtcctgctggccgcc
gtggaggaagccgtgcaggccgccgagcagaccgcgcgcagcgccgacagcggccatctg
gacctgttcggcgggctgttcgccgagcccgaggcggacgtctatgccaatcaccgcaac
gcccgcgagctgtcgctcaaggatcgcctcaagggcgaaaaggacaccttgggcctgtac
ctgaccggccatccgatcgacgagtacgaaggcgaggtccgccgcttcgcccgccagcgc
atcgtcgagctgcgcccggcgcgggaactccagacgatcgccggactgatcgtcaacctg
cgggtaatgaagaacaagaagggcgacaagatgggtttcatcaccctcgacgatcgctcc
gcgcggattgaggcctccctgttcgccgatgccttcgccggcgcccaggcgctcctgcag
accgatgccctggtagttgtggagggcgaggtcagcaacgacgacttctccggtggcctg
cgcctgcgcgccaagcgggtgatgagcctggaggaggcacgcacgggactggccgagagc
ctgcggctgcgggtcgccagcgaggcgctggaaggggatcgcctgcgctggctggcggag
ctctgcagccgctatcggggcgcctgccccatcaccctggactacatcgggcgcgaggcg
cgtgccctgctgcagttcggcgaagcgtggcggatcgatccggcggacagcctgattcag
acgctgcgtgaccagttcggcaaggacaacgtctttctgcactaccgctga
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integrated database retrieval system
