Azotobacter vinelandii CA6: AvCA6_42780
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Entry
AvCA6_42780 CDS
T02634
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
avd
Azotobacter vinelandii CA6
Pathway
avd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA6_42780 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avd03019
]
AvCA6_42780 (pnp)
03016 Transfer RNA biogenesis [BR:
avd03016
]
AvCA6_42780 (pnp)
Enzymes [BR:
avd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AvCA6_42780 (pnp)
Messenger RNA biogenesis [BR:
avd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AvCA6_42780 (pnp)
Transfer RNA biogenesis [BR:
avd03016
]
Prokaryotic type
tRNA degradation factors
AvCA6_42780 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
KH_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AGK18536
UniProt:
M9Y9M9
LinkDB
All DBs
Position
complement(4315231..4317339)
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AA seq
702 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQASGAVLVTIDDEVAVLVTVVAAKQADPGKGFFPLS
VHYQEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVICTVLST
SKKTDPDIASMIGTSAALAVSGIPFNGPIGAARVGFHEETGYLLNPSYEQLKASRLDMVV
AGTESAVLMVESEAEELTEDQMLGAVLFAHEEFQAVIQAIKEFAAETGRSAWDWQPPVEN
TALLEAIRAEFGEAISQAYTITVKQERYGRLDELREQTIARLAGDAEGQPSVAEVKEAFG
LIEYRTVRQNIVDGKPRIDGRDNRTVRPLKIEVGVLPKTHGSALFTRGETQALVVATLGT
ARDAQVLDTLEGERKDSFMLHYNFPPFSVGECGRMGSAGRREIGHGRLARRGVQAMLPKD
DSFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL
TDILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITEEIMEIALNQALEARLHILGQMG
QVIGQSRSELSSNAPTMLSMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF
GETREAAEAAKQRVLSITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISQISDQR
IEKVTDVLKEGQEVKVLVLDVDNRGRIKLSIKDVAAAEASGV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccggttatcaagacattccagttcggtcagtcgaccgttaccctggagaccggc
cgcatcgcccgccaggcctccggggccgtgctggtcaccatcgacgatgaggtggccgtg
ctggtcaccgtggtcgccgccaagcaggccgacccgggcaagggattcttcccgctgtcc
gtgcactatcaggaaaagacttacgctgccggccgcattcccggcggtttcttcaagcgc
gaaggccgtccttccgagaaggaaaccctgacctcgcgcctgatcgaccggccgatccgc
ccgttgttccccgagggcttcatgaacgaggtgcaggtgatctgcactgtgctgtccacc
agcaagaagaccgatccggatatcgcctcgatgatcggcacctcggccgccctggccgtc
tccggcattcccttcaacggtccgatcggcgccgctcgcgtgggtttccacgaggaaacc
ggctatctgctcaaccccagctacgagcagctcaaggcttcccgcctcgacatggtggtg
gccggcaccgagtccgccgtgctgatggtcgagtccgaggccgaagagctgaccgaggac
cagatgctcggcgccgtgctgttcgctcatgaagaattccaggcggtgatccaggccatc
aaggagttcgccgccgagaccggtcggtcggcctgggactggcagccgccggtcgagaac
accgcgctgctcgaggccatccgcgccgaattcggcgaggccatctcgcaggcctacacc
attaccgtcaaacaggagcgctatggccgcctggatgagctgcgcgagcagaccatcgcc
cggctggccggcgatgcggaggggcagccatccgtcgccgaggtcaaggaggccttcggt
ctgatcgagtaccggaccgtgcgtcagaacatcgtcgacggcaaaccgcggatcgacggt
cgtgacaaccgcaccgtacgtccgctgaagatcgaggtcggcgtcctgccgaagacccac
ggctcggccttgttcactcgtggcgaaacccaggcgctggtggtggccaccctgggcacc
gcgcgcgacgcccaggtgctcgacaccttggaaggcgagcgcaaggacagcttcatgctg
cattacaacttcccgccgttctcggtcggcgagtgcggtcgcatgggcagcgccggtcgc
cgcgagatcggtcatggtcgtctggcccgccgcggcgtgcaggccatgctgccgaaggac
gacagcttcccctacaccgtgcgcgtggtatcggaaatcaccgaatccaacggctccagc
tcgatggcatcggtctgcggtgcctcgctcgcactgatggatgccggcgtgccgatgaag
gcaccggtggccggtatcgccatggggctggtcaaggaaggcgagaagttcgccgtactg
accgacatcctcggcgacgaggatcatctgggcgacatggacttcaaggttgccggcacc
gccgctggcgtcaccgcgctgcagatggacatcaagatccagggcatcaccgaggaaatc
atggagatcgccctgaaccaggcactggaggcccgtctgcacatcctcggccagatgggc
caggtgatcggccagtcgcgcagcgagctgtcctccaacgcgccgaccatgctgtcgatg
aagatcgaccaggacaagatccgcgacgtgatcggcaagggcggtgccaccatccgcgcc
atctgcgaggaaaccaaggcctccatcgatatcgaggacgacggttcgatcaagatcttc
ggcgaaacccgcgaggcggcggaagcggccaagcagcgcgtgctgtccatcaccgccgaa
gccgagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggcgccttc
gtcaatatcctgccgggcaaggatggcctggtgcatatctcgcagatcagcgaccagcgt
atcgagaaggtcaccgacgtgctcaaggagggccaggaggtgaaggtgctggtactcgat
gtggacaaccgtggccgcatcaagctgtcgatcaaggacgtcgccgctgccgaggcatcc
ggcgtctga
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