Agrobacterium vitis VAR03-1: RvVAR031_01530
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Entry
RvVAR031_01530 CDS
T08810
Symbol
sucD
Name
(GenBank) succinate--CoA ligase [ADP-forming] subunit alpha
KO
K01902
succinyl-CoA synthetase alpha subunit [EC:
6.2.1.5
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00020
Citrate cycle (TCA cycle)
avf00640
Propanoate metabolism
avf00660
C5-Branched dibasic acid metabolism
avf00720
Other carbon fixation pathways
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
Module
avf_M00009
Citrate cycle (TCA cycle, Krebs cycle)
avf_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RvVAR031_01530 (sucD)
00640 Propanoate metabolism
RvVAR031_01530 (sucD)
00660 C5-Branched dibasic acid metabolism
RvVAR031_01530 (sucD)
09102 Energy metabolism
00720 Other carbon fixation pathways
RvVAR031_01530 (sucD)
Enzymes [BR:
avf01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
RvVAR031_01530 (sucD)
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Gene cluster
GFIT
Motif
Pfam:
Ligase_CoA
CoA_binding
Succ_CoA_lig
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
BCH52543
LinkDB
All DBs
Position
1:complement(177277..178179)
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AA seq
300 aa
AA seq
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MSILINKDTKVLVQGLTGKTGTFHTEQALAYYGTKMVGGIHPSKGGSNWTGSKGETLPIF
ASVAEGKDVTGANASVIYVPPAGAAAAIIEAIEAEIPLIVCITEGIPVADMVKVKARLDK
SKSRLIGPNCPGVMTPEECKIGIMPGSIFRKGSVGVLSRSGTLTYEAVFQTSNEGLGQTS
AVGIGGDPVKGTEFIDILEMYLADEATKSIIMIGEIGGSAEEEAAQFLKDEAKKGRKKPM
VGFIAGRTAPPGRTMGHAGAVISGGKGGAEDKIEAMESAGIRVSPSPARLGKTLVEVLKG
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattctgatcaataaagacaccaaggttcttgtacagggcctgaccggcaagacc
ggcactttccataccgaacaggcgcttgcctattacggcaccaagatggtcggcggtatt
catccttccaaaggtggcagcaactggaccggctccaagggcgaaaccctgccgatcttt
gcttccgttgccgaaggcaaggacgttaccggcgccaatgcatcggtgatctacgttccg
ccagcaggcgctgctgctgcgatcatcgaagccatcgaagctgaaattcctctgatcgtc
tgcatcacggaaggcattccggtcgccgatatggtcaaggtcaaggctcgcctcgacaag
tccaagtcgcgcctgattggccccaactgcccaggcgtgatgacgccggaagaatgcaag
atcggcattatgccgggctcgatcttccgcaagggttcggttggcgtgttgtcgcgttcc
ggcactttgacttacgaagccgtgttccagacctcgaatgaaggcctcggccagacgtct
gctgtcggtatcggcggcgacccggtcaagggcaccgagttcatcgacattctagaaatg
tacctcgctgacgaagccaccaagtcgatcatcatgatcggtgaaatcggcggctctgcg
gaagaagaagcagcacagttcctcaaggacgaagccaagaagggccgcaagaagccaatg
gtcggcttcatcgctggccgcacggctcctcccggtcgcaccatgggtcacgcgggcgct
gtgatctccggcggcaagggcggcgcggaagacaagatcgaagccatggaatcggctggc
atccgggtttcgccctcgccagcccgccttggcaagacgctggttgaagttctcaagggc
tga
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