Agrobacterium vitis VAR03-1: RvVAR031_01550
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Entry
RvVAR031_01550 CDS
T08810
Symbol
sucC
Name
(GenBank) succinate--CoA ligase [ADP-forming] subunit beta
KO
K01903
succinyl-CoA synthetase beta subunit [EC:
6.2.1.5
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00020
Citrate cycle (TCA cycle)
avf00640
Propanoate metabolism
avf00660
C5-Branched dibasic acid metabolism
avf00720
Other carbon fixation pathways
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
Module
avf_M00009
Citrate cycle (TCA cycle, Krebs cycle)
avf_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RvVAR031_01550 (sucC)
00640 Propanoate metabolism
RvVAR031_01550 (sucC)
00660 C5-Branched dibasic acid metabolism
RvVAR031_01550 (sucC)
09102 Energy metabolism
00720 Other carbon fixation pathways
RvVAR031_01550 (sucC)
Enzymes [BR:
avf01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
RvVAR031_01550 (sucC)
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Motif
Pfam:
ATP-grasp_2
Ligase_CoA
Citrate_synth_N
ATP-grasp_5
Phage_tube_2
Motif
Other DBs
NCBI-ProteinID:
BCH52545
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Position
1:complement(178564..179760)
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AA seq
398 aa
AA seq
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MNIHEYQAKALLKSFGAPVAEGVAIFSADEAEAAAKQLPGPLYVVKSQIHAGGRGKGKFK
ELGPEAKGGVRLAFSIDEVKSHVAEMFGNTLVTNQTGPAGKQVNRLYIEDGADIERELYL
SLLVDRAVGQVAFVVSTEGGMDIETVAHDTPEKIISVAIDPEAGVTAANLEALTAALLLE
GEAKADAEKLFPILYKAFVEKDMALLEVNPLIVMKNGRMRVLDAKMSFDGNALFRHEDVV
ALRDKTEEDAKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVG
GGATKEKVTAAFKIITADPAVKGILVNIFGGIMKCDVIAEGVLAAVKDVGLTVPLVVRLE
GTNVELGKKIINESGLNVISADDLDDAAQKIVAAVKAA
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgaatattcatgaataccaggccaaggctctactgaagagctttggcgcaccggttgcc
gaaggtgtggcaatcttttccgccgatgaagccgaggcggccgcaaagcagcttcctggc
ccgctttatgtcgttaagagccagatccacgctggtggtcgcggcaagggcaagtttaaa
gaacttggcccggaagccaagggcggcgttcgcttggcgttctcgatcgatgaagtgaag
tcgcatgttgctgaaatgttcggcaatacgctggtgaccaaccagaccggccccgctggc
aagcaggtgaaccgcctgtacatcgaagacggtgctgatatcgagcgcgaactttatctg
tcgctgctcgtcgatcgcgctgttggtcaggttgctttcgtggtctccaccgaaggcggc
atggacattgaaacggttgctcacgacaccccggaaaagatcatcagcgttgcgattgat
ccagaagctggtgtaacggctgccaatctcgaagccctgactgcggctctgctgctcgaa
ggcgaagccaaggctgacgctgaaaagctgttcccgatcctgtacaaagcctttgtcgaa
aaggacatggctctgctggaagtgaacccgttgatcgtgatgaagaacggccgtatgcgc
gttctcgacgccaagatgtctttcgacggcaacgctctgttccgtcacgaagacgttgtg
gctctgcgcgacaagaccgaagaagacgccaaggaaatcgaagcctccaagtatgatctg
gcttacgttgccctcgatggcaatatcggttgcatggtcaatggcgcaggtctggccatg
gcaaccatggacatcatcaagctctatggtgctgagccggcaaacttcctcgacgttggt
ggcggtgcgaccaaggaaaaggtaacggcagccttcaagatcatcactgccgatccggct
gtgaagggcattctggtcaacatcttcggcggtatcatgaagtgtgacgtgattgccgag
ggcgttctggctgccgttaaggacgtcggtctcaccgttccactcgtcgttcgcctcgaa
ggcaccaatgtcgagctgggcaagaaaatcatcaacgaatccggtctcaacgtcatttcg
gcggatgatctggatgatgctgcgcagaagatcgtcgcagccgtgaaggcagcgtga
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