Agrobacterium vitis VAR03-1: RvVAR031_01600
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Entry
RvVAR031_01600 CDS
T08810
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00020
Citrate cycle (TCA cycle)
avf00190
Oxidative phosphorylation
avf00650
Butanoate metabolism
avf00720
Other carbon fixation pathways
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
Module
avf_M00009
Citrate cycle (TCA cycle, Krebs cycle)
avf_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
avf_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RvVAR031_01600 (sdhA)
00650 Butanoate metabolism
RvVAR031_01600 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
RvVAR031_01600 (sdhA)
00720 Other carbon fixation pathways
RvVAR031_01600 (sdhA)
Enzymes [BR:
avf01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
RvVAR031_01600 (sdhA)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
GIDA
DAO
Pyr_redox_2
Thi4
FAD_oxidored
FAD_binding_3
HI0933_like
Motif
Other DBs
NCBI-ProteinID:
BCH52550
LinkDB
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Position
1:complement(183966..185822)
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AA seq
618 aa
AA seq
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MAATSSSSKAGPTINGRSYTYVDHAYDVVVVGAGGAGLRATLGMAEQGFKTACITKVFPT
RSHTVAAQGGIAASLNNMTPDCWQWHLYDTVKGSDWLGDVDAMQYLAMEAPKAVYELEHY
GVPFSRNEEGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQSLKHNAEFF
IEYFALDLIMAEDGRCTGVVAWNLDDGTIHRFSAKMVVLATGGYGRAYFSATSAHTCTGD
GGGMIARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSEGERFMERYAPSAK
DLASRDVVSRCMTLEIREGRGVGKNKDHIYLHLDHLDPAVLHERLPGISESAKIFAGVDV
TREPIPVLPTVHYNMGGIPTNYWGEVLNADAENPERIAPGLMAVGEAGCASVHGANRLGS
NSLIDLVVFGRAAAIRAAEVIDRVSPIPALNVAACDKIMERFDAIRHSSGSTPTAVLRDK
MQRAMQEDAAVFRTQEALESGCRRISEIWKEMPDIKVTDRSLVWNSDLVETLELHNLMAN
AITTVYGAEARKESRGSHAREDFVDGPYGGRDDVNWRKHTLAWVNEAGDVKLDYRPVHTE
LLADGIDPKKIEPKARVY
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgacaagttcttcttccaaggccggcccaaccatcaatggccgcagttatacc
tatgtcgatcacgcctatgacgtggtcgttgtcggcgccggtggcgctggcctgcgcgct
acgctcggcatggccgagcagggtttcaagaccgcctgtatcaccaaggttttcccgacg
cgctcccacacggttgcagcccaaggcggtattgccgcttcgctcaacaacatgacgccg
gattgctggcagtggcatctttacgataccgtcaagggctcggactggctgggcgatgtg
gacgccatgcaatatctggccatggaagcgccaaaggcggtctatgagctggaacattac
ggcgtgccgttctcgcggaatgaagaaggcaagatctatcagcgccccttcggtggccat
atgcagaattacggcgaaggtccgccggtacagcgcacctgtgctgccgccgaccggacc
ggccacgccattctgcatacgctttacggtcagtccttgaagcacaacgctgaattcttc
atcgaatatttcgccctcgacctgatcatggccgaggatggccgttgcaccggtgttgtg
gcctggaacctcgatgatggcacgatccatcgcttctccgccaagatggtggtgctggcg
accggcggttatggtcgcgcctatttctctgcaacgtcggcccatacctgcactggcgat
ggtggcggcatgattgcccgcgccggtctgccgcttcaggacatggaattcgttcagttc
cacccgaccggtatttacggtgctggctgtctgatcaccgagggcgcacgcggcgaaggc
ggctatctggtcaattccgagggtgagcgtttcatggaacgctatgcaccatcggccaag
gatcttgcctcgcgtgacgtggtttcgcgctgcatgaccctggaaatccgcgagggccgg
ggcgttggcaagaacaaggatcacatctacctgcatctcgaccatctcgatccggccgtg
ttgcatgagcgcctgccgggcatttccgagagcgccaagatttttgccggcgtcgatgtc
acccgcgaaccgatcccggttctgccgaccgttcactacaacatgggtggcattccgacc
aattactggggcgaagtgctgaacgccgatgctgaaaaccccgagcgcatcgcgcccggc
ctgatggctgtcggtgaagccggttgcgcttccgtgcatggggcaaaccgtctcggttcc
aattcgctgatcgacctcgtggtgttcggacgtgctgcggccatccgtgccgctgaagtg
atcgaccgggtgtcaccgatcccggcgctgaacgtcgcggcctgcgacaagatcatggag
cggtttgacgccatccgtcattccagcggctcgacgccgactgccgtgctgcgtgacaag
atgcagcgcgccatgcaggaagatgctgcggtgttccgcacccaggaagcgctggaaagt
ggttgccgccggatctcggaaatctggaaggaaatgcccgacatcaaggtcacggaccgg
tcgctggtatggaattccgatctggtggaaaccctggagctgcacaatctgatggccaat
gccatcaccacggtttatggcgcggaagcccgcaaggaaagccgtggttcgcatgcccgc
gaggattttgtcgacggtccttatggtggtcgcgacgacgtcaactggcgcaagcacacc
ctggcctgggtcaatgaagcgggcgatgtgaagctggattaccgtcctgtacacaccgag
cttctggcggatgggatcgatcctaagaagatcgagcccaaggcccgcgtttattga
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