Agrobacterium vitis VAR03-1: RvVAR031_02680
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Entry
RvVAR031_02680 CDS
T08810
Name
(GenBank) RNA polymerase sigma factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avf03021
]
RvVAR031_02680
Transcription machinery [BR:
avf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RvVAR031_02680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
KORA
HTH_10
FAZ1_cons
GerE
Motif
Other DBs
NCBI-ProteinID:
BCH52658
LinkDB
All DBs
Position
1:complement(287961..288818)
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AA seq
285 aa
AA seq
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MNSLQADKKLIRIAMAAPYLERQEEHDLAVRWKHGNDQVARNQIAHAHMRLVIAMASKFR
GFGLPLGDLIQEGYIGLLEAAARFEPTREVRFSTYAGWWIRASMQDYILRNWSIVRGGTS
SSQKALFFNLRRLRAKLAQGDQRLTDQAIHQEIATALGVSLADVQSMDARLSSNDTSLQA
PISNNGEEGAERLDMLASDEPTPDEQVTDMIDTERRLDWLRGAMAHLNEREMRIIRARRL
SEDGATLEELGCELGISKERVRQIETRAMEKLKVALVEANPQMVA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgaattccctgcaagccgacaagaagctcatcagaattgcaatggctgcaccgtatctg
gagcgccaggaggagcatgatctggcggtccgctggaaacacggcaacgaccaggtggcc
cgcaaccagattgcccatgcccatatgcggctggtgattgccatggcttccaagttccgt
ggcttcggcttgccgctcggcgatctcattcaagaaggctatatagggctgctggaagct
gcggcaaggttcgagccgacccgcgaagtgcgtttttcgacctatgcagggtggtggatt
cgcgcctccatgcaggattatatcctgcgcaactggtccatcgtgcgcggcggcaccagc
tcctcccagaaagcactgtttttcaacctgcgccggttgcgggcaaagcttgcccagggc
gatcaacgcctgaccgatcaggccattcatcaggaaatcgccactgcgcttggcgtcagc
cttgccgatgtccagtcgatggatgcccggctctcttccaacgacacgtcccttcaagca
ccgatttccaacaacggtgaagagggtgccgagcgtctggacatgctggccagcgatgag
ccgacaccggacgagcaggtaacggatatgatcgataccgagcgccgcctggactggcta
cgcggcgccatggcgcatctgaatgagcgcgaaatgcgcatcattcgtgcccggcggctt
tctgaggatggcgccacccttgaggagctgggctgtgagcttggtatttccaaggagcgg
gttcgccagatcgagacacgggcgatggaaaagctgaaggtcgccctggttgaggccaat
ccgcagatggtggcctga
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