Agrobacterium vitis VAR03-1: RvVAR031_02730
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Entry
RvVAR031_02730 CDS
T08810
Symbol
rlmH
Name
(GenBank) ribosomal RNA large subunit methyltransferase H
KO
K00783
23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:
2.1.1.177
]
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avf03009
]
RvVAR031_02730 (rlmH)
Enzymes [BR:
avf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.177 23S rRNA (pseudouridine1915-N3)-methyltransferase
RvVAR031_02730 (rlmH)
Ribosome biogenesis [BR:
avf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RvVAR031_02730 (rlmH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPOUT_MTase
Methyltrn_RNA_4
Motif
Other DBs
NCBI-ProteinID:
BCH52663
LinkDB
All DBs
Position
1:complement(292519..293001)
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AA seq
160 aa
AA seq
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MRIGIVAVGRLKAGPEKDLVSRYLDRFAKAGPASGLEFSRVSELPESRASNSATRKREEA
VQIEKSLPDNPLVVALDERGKSWDSQEFAAYVGDHKDRGRRDMVIVIGGADGLDPDFRDR
ADLVLNLGKMTWPHQLVRIMLAEQLYRAVTILSGHPYHRS
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atgcggataggcattgttgccgttggccggttgaaagccgggccagagaaagatcttgtg
tcacgctatctggaccgttttgccaaggccggtccagcaagcgggctggaattttctcgt
gtcagcgagctgccggaaagcagagcctcgaattcggccacccgtaagcgggaagaggcg
gtgcagatcgaaaaatccctgccggacaatcctcttgtcgtggcgctggatgagcgcggc
aaaagctgggacagccaggaatttgcggcttatgtgggtgaccacaaggatcgtggtcgc
cgtgacatggtgatcgttatcggcggggccgatggcctcgaccccgatttccgcgaccgg
gccgatctggtgctgaacctgggaaaaatgacctggccgcatcagctggtgcgcatcatg
ctagccgaacagctctaccgtgctgttaccatcctctccggccatccctatcaccgttcc
tga
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