Agrobacterium vitis VAR03-1: RvVAR031_02840
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Entry
RvVAR031_02840 CDS
T08810
Symbol
rtcR
Name
(GenBank) transcriptional regulator
KO
K14414
transcriptional regulatory protein RtcR
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
avf03000
]
RvVAR031_02840 (rtcR)
Transcription factors [BR:
avf03000
]
Prokaryotic type
Other transcription factors
Others
RvVAR031_02840 (rtcR)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA
Mg_chelatase
AAA_16
AAA_22
NACHT
MCM
AAA_7
ATPase_2
AAA_14
T2SSE
ABC_tran
AAA_18
AAA_2
NTPase_1
AAA_33
AAA_30
AAA_29
AAA_19
TsaE
CARF_Card1
Motif
Other DBs
NCBI-ProteinID:
BCH52674
LinkDB
All DBs
Position
1:complement(301437..303044)
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AA seq
535 aa
AA seq
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MKRRVALSILGTTLDAGKWENRWTRWRPNVGLCQQSGLFIDRLELIHDNHASALASRVTS
DIATVSPATEVRSNLINFKDPWDFSEVYTQLRDFARNYAFDPDTEDYLVNITTGTHVAQI
CWFLLTEARIIPGRLLQLSPPRDRELTQDFSGTHRIIDLDLSRYDEIAKRFASEREDAAS
FLKSGISTRNAAFNRMIDEIERVVIRSTAPVLLTGPTGAGKSQLARRIYELKKNQRKLVG
PFIEVNCATLRGDQAMSTLFGHVKGAFTGAAGERAGLLKSADKGVLFLDEIGELGPDEQA
MCLRAIEEKRFLPVGSDRETSADFQLLAGTNRDLGEDVRKGRFREDLYARLNLWTFQLPA
LRDRKEDIEPNLEFELRRFLEREGENVTFNKEARDRYLAFATGPQGIWSANFRDLSASIT
RMATLAPHGRITTDVVDDEIQRLNNFWRSSSDRHEADTLLEELLGFDVAARLDRFDAIQL
SAVIRICREHATPSSAGRVLFAQSRLEKKSSNDADRLIKYLARFGLKFEDVRAAR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtcgcgttgctcttagcattttggggactacccttgatgcaggaaaatgggaa
aatcgctggacccggtggcggcctaatgtcgggctttgccagcagagtggactgttcatc
gatcgactggagctcatccacgataatcatgcgagcgcactggccagccgggtcaccagt
gatatcgcaaccgtgtctccggcgaccgaggtccgcagcaatctgatcaattttaaggat
ccctgggacttttccgaggtctatacgcagctgcgagattttgcccgcaattatgctttc
gacccggatactgaggattatcttgttaacattaccacgggcacgcacgttgcgcagatc
tgctggttcctgctgaccgaggcccggattattccgggtcgtttgctgcaactttcgcca
ccacgcgaccgggaactgacacaggatttttctggcacgcacaggattatcgaccttgac
ctctcccgctacgacgagattgccaagcgttttgcctcggagcgggaagacgcggcatcc
tttttgaaatcaggcatttcgacccgcaacgcggcgttcaaccgaatgatcgacgaaatc
gagagagtagtcatccgctcgacggcgcccgttctcctgaccggtccgacaggggccgga
aaatcccagctcgcccgcaggatttatgagctcaagaaaaaccagcgcaagcttgttggc
ccgttcatagaagtcaattgtgccaccctgcgcggcgatcaggccatgtccaccctgttt
ggccacgtgaagggtgcattcacaggcgctgcaggcgagcgtgcgggcttgctcaaatcg
gcggataaaggcgtgctcttccttgacgagattggtgaactcggccctgacgaacaggcc
atgtgcttacgcgcgatcgaggaaaagcgatttttgcccgtagggtctgaccgagagaca
tcagcagactttcaactgcttgccggcaccaatcgcgaccttggcgaagatgtccgcaaa
gggaggttccgcgaagatctctatgcccggctcaatctctggactttccagcttccggcc
ttgcgagaccgcaaggaggatatcgaacccaatctcgaattcgaactcagacggtttctg
gagcgggaaggcgaaaacgtcacgttcaataaggaagcccgcgaccgttaccttgccttt
gcgaccggcccgcaaggcatctggagtgcaaacttccgcgacctttccgcctctatcact
cgcatggcgaccttggcaccccatggacgcattacgacagatgtcgtcgacgatgagatc
cagagattgaataacttttggcgctcatcgtccgaccgccacgaagccgatacactactc
gaagaactattgggcttcgacgtcgccgcgcgcctggaccgcttcgacgccatccagctc
tccgccgtcatccgcatctgcagggaacatgcaaccccaagctccgcgggcagggttttg
ttcgcacagtcgcgattggaaaagaagagcagtaacgacgccgatcgcctcatcaaatac
ctagcccgatttggcctcaagttcgaagacgtaagggcggcacgttaa
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