Agrobacterium vitis VAR03-1: RvVAR031_03830
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Entry
RvVAR031_03830 CDS
T08810
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03030
DNA replication
avf03430
Mismatch repair
avf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAR031_03830
03430 Mismatch repair
RvVAR031_03830
03440 Homologous recombination
RvVAR031_03830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_03830
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_03830
Enzymes [BR:
avf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAR031_03830
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAR031_03830
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAR031_03830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
BCH52773
LinkDB
All DBs
Position
1:432548..433258
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AA seq
236 aa
AA seq
DB search
MREIVFDTETTGLENKLDRVIEIGGIELFNHFPTGRSFHVYINPADRAIHPDALAIHGIT
PEFLKDKPVFADIVEDLVAFFDGAKWVAHNATFDMGFINAEFDRLGRPPVGPEHVVDTLS
LARRKHPMGPNSLDALCRRYGIDNSHRTKHGALLDSELLAEVYIEMLGGRQATFGLEQSG
NSDKRSRTQDSNVTVEIAARPKTLAPRLTEVEQERHAALVKRLGQKAIWAHYNQGE
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgcgggaaatcgttttcgatacggaaaccaccggactggaaaacaagctggaccgggtg
attgaaatcggtggcatcgaattgttcaatcatttcccgactggccgcagttttcatgtc
tatatcaatcctgccgaccgggccatacacccggatgccttggcgattcacggcattaca
ccggagtttttgaaggacaagccggtcttcgctgatattgtcgaggatctggtggcgttt
ttcgacggcgcgaaatgggtggcgcataatgccacattcgacatgggatttatcaatgcc
gagtttgatcggttgggtcgcccgccggtcgggccggagcatgtcgtcgataccctgtct
ctggcgcggcgcaaacacccgatgggccccaactcgcttgatgcgctttgccgacgctac
ggtatcgacaattctcatcgcaccaagcatggcgccttgctcgattccgaacttctggct
gaagtctatatcgaaatgctgggcggccgccaggcgacctttggtcttgagcagtctgga
aacagcgacaagcgatcccgcactcaagatagcaatgtgacggtggaaattgccgcccgt
ccgaaaacactggcgccgcgtctaaccgaggttgagcaggaacgccatgcagccctggtc
aagcggcttggccagaaggcgatctgggcgcattacaatcaaggcgaataa
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