Agrobacterium vitis VAR03-1: RvVAR031_04250
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Entry
RvVAR031_04250 CDS
T08810
Symbol
glcB
Name
(GenBank) malate synthase G
KO
K01638
malate synthase [EC:
2.3.3.9
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00620
Pyruvate metabolism
avf00630
Glyoxylate and dicarboxylate metabolism
avf01100
Metabolic pathways
avf01110
Biosynthesis of secondary metabolites
avf01120
Microbial metabolism in diverse environments
avf01200
Carbon metabolism
Module
avf_M00012
Glyoxylate cycle
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00620 Pyruvate metabolism
RvVAR031_04250 (glcB)
00630 Glyoxylate and dicarboxylate metabolism
RvVAR031_04250 (glcB)
Enzymes [BR:
avf01000
]
2. Transferases
2.3 Acyltransferases
2.3.3 Acyl groups converted into alkyl groups on transfer
2.3.3.9 malate synthase
RvVAR031_04250 (glcB)
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Gene cluster
GFIT
Motif
Pfam:
MS_TIM-barrel
MS_C
MSG_insertion
MS_N
DUF6986
Motif
Other DBs
NCBI-ProteinID:
BCH52815
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Position
1:480638..482818
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AA seq
726 aa
AA seq
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MARAEQFGLAIEQDLYDFLVSEALPGTSVEPEAFFQHFSSLVHELAPKNRALLAKRDAFQ
AQLDSWYKQNGAPSDLAAYEAFLRDIGYLLPEGPDFSVTTSNVDAEIASIAGPQLVVPVM
NARYALNAANARWGSLYDALYGTDAISEADGAEKGRGYNPKRGEKVIAWARGFLDQSAPL
AGGCWADVAGLALTDGYLDVTLNSGDKTGLMDPSQLSGTFSEDDSVTSYLLRRNGLHVEI
CIDSQGAIGAADKAHINDIRLESAITAIMDCEDSVAAVDAEDKILAYSNWLGLMKGDLEE
VVAKGDHVFTRALNPDLEFTDPQGKPFTVACRSLMLIRNVGHLMTNPAILDRDGAEVPEG
IMDAMVTALIALHDIGPNGRRQNSRQGSMYVVKPKMHGPEEVAFAVEIFTRVEQALGMEP
NTIKMGIMDEERRTTVNLKECIRAAKDRVVFINTGFLDRTGDEIHTSMEAGPMIRKGDMK
QAAWIAAYENWNVDIGLQCGLSGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPS
PTAATLHATHYHQVDVAGVQDGLKSRTRAKLSDILSVPVATRPNWTPEEIQRELDNNAQG
ILGYVVRWIDQGIGCSKVPDINNVGLMEDRATLRISAQHMANWLHHGVVTEAQVVETLKR
MAAIVDKQNAGDSAYRPMAADFDTSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKAT
AIPAKV
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtgccgaacagtttggtctggctatcgagcaggatctctatgattttctggtg
agcgaggccttgccggggacaagcgtggagccagaggctttcttccagcatttctccagc
cttgtgcatgaacttgcgccgaagaaccgcgccttgctggccaaacgcgacgcttttcaa
gcgcagctggacagttggtataagcaaaacggcgctccctcggatcttgctgcttacgaa
gctttcctgcgcgatatcggctatctcctgccggaaggaccggatttctccgtgacgacc
agcaatgttgacgcggaaatcgcttcgattgccgggccgcagcttgtcgtgcctgtgatg
aatgcccgctatgccctgaatgccgccaacgctcgctggggttcgctctacgatgcgctc
tacggaacggatgcgatttccgaggcagacggtgccgaaaagggcagggggtataatccc
aaacgtggcgaaaaggttattgcctgggcccgcggtttcctcgaccagtctgcgccactg
gcgggtggctgctgggcggatgtggcagggcttgcgctcaccgatggctatctcgatgtg
actctgaactccggcgacaagaccgggttgatggacccctcgcaactgtcgggaactttc
agcgaagacgacagcgtgacgtcctatctgctgcgccgcaacggcctgcatgtggaaatc
tgcattgactcgcagggtgcgatcggcgctgccgataaggcgcatatcaacgatatcaga
ctggaatcggcgattaccgccatcatggactgcgaggattcggttgccgccgtcgatgcc
gaggacaagatcctcgcctattccaactggctcggcttgatgaagggtgatctggaggaa
gtggttgccaagggtgatcatgtctttacccgcgccctcaatcccgatctcgaattcacc
gatccgcagggcaagccctttaccgtcgcgtgccggtcgctgatgctgattcgcaatgtc
gggcatctgatgaccaatccggccattctggatcgcgacggtgcagaggtgccggaaggc
attatggacgcaatggtgaccgcgctgatcgcgctgcacgatattggcccgaacggacgg
cggcagaattcgcgccaggggtcgatgtatgtggtgaagccgaaaatgcatgggccggaa
gaagtggcctttgccgttgaaatcttcacccgtgtcgaacaggcgctgggcatggaaccc
aatacgatcaagatgggcattatggatgaggaacgccgcaccacggttaacctcaaggaa
tgcatccgcgccgccaaggaccgggtggtgttcatcaataccggtttcctcgaccgcacc
ggcgacgaaatccatacgtcgatggaggccgggccgatgatccgcaagggcgatatgaag
caggccgcctggattgcggcttatgaaaactggaacgtcgatatcggtctgcaatgcggc
ctgtccggccatgcccagattggcaagggcatgtgggccatgccggacctgatggcagcg
atgctggaacagaagatcgcccatccgaaagcgggcgccaataccgcctgggttccatcg
ccgacggcggcaacgctgcatgccacccattatcatcaggtggatgtcgcgggcgttcag
gacgggttgaaaagtcggacacgggccaagctctccgatattctgtcggtgccggtggcc
acgcgtcctaattggacgccggaagaaattcagcgcgagctggataacaatgcccagggc
attctgggctatgtggtccgctggatcgaccagggcatcggctgctcgaaagtgcctgac
atcaacaatgtcgggctgatggaagaccgtgcaaccctgcgcatctccgcccaacacatg
gccaactggctgcatcatggcgttgtcaccgaggcgcaggtggtcgaaacactcaaacgg
atggcagccatcgtcgacaagcagaatgcgggtgattcggcctatcgcccgatggctgcc
gatttcgacacttccatcgctttccaggcggcgcttgatctggtgttgaagggcagggag
cagccgaacggctataccgaaccggttctgcaccgccgccggcttgagttaaaggccaca
gcaattccagcaaaagtgtga
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