Agrobacterium vitis VAR03-1: RvVAR031_04690
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Entry
RvVAR031_04690 CDS
T08810
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03030
DNA replication
avf03430
Mismatch repair
avf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RvVAR031_04690
03430 Mismatch repair
RvVAR031_04690
03440 Homologous recombination
RvVAR031_04690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_04690
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_04690
Enzymes [BR:
avf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RvVAR031_04690
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RvVAR031_04690
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RvVAR031_04690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DUF3646
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
AAA_16
AAA_5
AAA_30
AAA_14
AAA_19
AAA_18
RuvB_N
AAA_assoc_2
AAA_24
TsaE
SRP54
DUF815
SKI
ResIII
Rad17
AAA_28
AAA_2
CbiA
nSTAND3
ABC_tran
VapE-like_dom
AAA_17
RNA_helicase
Thymidylate_kin
PduV-EutP
Motif
Other DBs
NCBI-ProteinID:
BCH52859
LinkDB
All DBs
Position
1:533893..535791
Genome browser
AA seq
632 aa
AA seq
DB search
MSDLEPTAQAAPASGQASGAYRVLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAY
MLTGVRGVGKTTTARILARALNYKTTEIDRPTIDLKIPGEHCQAIMEGRHVDVIEMDAAS
HTGIDDIREIIEQVRYRPVSARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATT
EIRKVPITVLSRCQRFDLRRISAGDLVGLFSTILSKENIEAEDEALAMIARAAEGSARDG
LSLLDQAIAHGAGRVEADAVRSMLGLADRARVVDLFGHIVLGDVAAALSEFNSQYEAGAS
PSVVLTDLADFTHLVTRLKYVPNGANDPSLSEVERVRGGDYAESVAVTTLSRIWQMLLKG
IPEVENASRQAGAAEMVLIRLAHAAHLPSPEEAARRLLDMAQDGGGAPQGTSPRGGNGGG
GASASYGGQAVARASSDPAPRALGQPQPTAHLQVVPKASPSPDIAARPEIKPEIQPDVPE
PKVPVRSLDDIVNLCTANRDPKLKALTRAYVRLVKLDNGRLEINLPPEAPKSLVGDLQKR
LEEWTDIRWMVILSREPGAKTLAEQEKSDHEARMTDAAADPDVMAILSRFPGAKITDVRI
RTVTEEEDEALPPPAAAESAEGDILPGDDIEF
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatctggaacccacagcacaagctgctcccgcgtccggccaagcctctggtgct
taccgggttctggcgcgcaaatatcgcccgaaggattttacggacctgatggtcggccaa
gagccgatggtccgcaccctcactaatgccttcgaaacaggacggattgcccaagcctat
atgctgaccggcgtgcgcggggttggcaagaccacgaccgcccgtattctcgcccgcgcg
ctgaactacaaaaccactgagatcgaccgcccgaccatcgacctgaaaatccccggggag
cattgtcaggcgatcatggaaggccgccatgtcgatgtgatcgagatggatgccgcctcc
cataccggtattgacgacatcagggaaattatcgagcaggtgcgctaccgcccggtatcg
gcccgctacaaggtctacattatcgacgaagtgcatatgctctccaccgctgccttcaac
ggtttgttgaagacgctggaagagccgccggaacacgtcaagttcatcttcgccaccacc
gaaatccgcaaggtgccgatcaccgtgctgtcacgctgccagcgctttgatctgcgccgc
atcagcgctggcgatctcgtcgggctgttttccaccattctctccaaggaaaatatcgag
gcggaagacgaggcgctggcaatgatcgcccgtgccgccgaaggctcggcccgtgacgga
ctttccctgctcgatcaggccattgcccatggggcagggcgggtcgaagcagatgccgtg
cgttccatgctgggtctggccgaccgcgcccgggtggtcgacctgtttggccatatcgtg
ctcggcgatgtcgccgcggctctttcggaattcaacagccaatacgaagccggcgccagc
ccaagcgtggtgctgaccgatcttgctgattttacccatctggtgacgcggctgaaatat
gtgcccaatggcgctaatgacccgtcgctgagcgaagtcgagcgggtgcgagggggggat
tacgctgaaagcgttgctgtcaccacgctgtcgcgcatctggcaaatgttgctcaagggc
attcccgaggttgaaaacgcttcccgtcaggccggtgcagccgaaatggtgctgatccgg
ctggcccatgccgcccatctgccgtcgccggaagaagcggcgcgccgcctgctggacatg
gcacaggatggcggtggtgcgccgcaggggaccagtcccagaggcggtaatggtggcggt
ggcgcatcggccagctatggcggtcaggcggtggcgcgggcatcgagcgatccggcccca
cgtgcattaggccaaccacagccgaccgcgcatttgcaggtggttcccaaggcatcgccg
tcgccggacattgccgcccgcccggagataaagcctgagatccaacctgatgtgccggaa
cccaaggttcccgtcaggtcgttggatgacatcgtcaatctctgtaccgcaaaccgcgat
ccgaagctgaaagccttgacccgcgcctatgtgcggctggtcaagctggacaacggacgg
ctggagatcaacctgccgccggaggcgccgaaatcgctggtgggtgatctgcaaaaacgg
ctggaggaatggaccgatatccgctggatggtgattctcagccgagagccgggggcaaag
accctggccgagcaggaaaagagcgatcacgaagcgcggatgaccgatgcagccgccgat
ccggatgtgatggcgattctgtcgcgctttcccggcgcgaaaatcaccgacgtgcgcatc
cgcaccgtcacggaggaagaggacgaggccctgccgccaccagctgcggctgaatccgcc
gagggcgatattcttcccggagatgatatcgagttttag
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