Agrobacterium vitis VAR03-1: RvVAR031_05190
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Entry
RvVAR031_05190 CDS
T08810
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avf03016
]
RvVAR031_05190 (truB)
Enzymes [BR:
avf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RvVAR031_05190 (truB)
Transfer RNA biogenesis [BR:
avf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RvVAR031_05190 (truB)
Prokaryotic type
RvVAR031_05190 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
BCH52909
LinkDB
All DBs
Position
1:590214..591143
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AA seq
309 aa
AA seq
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MSKPRKPKGRPVSGWLILDKPVDYGSTEAVGKIKWLFNAQKAGHAGTLDPLASGMLPIAL
GDATKTVPYVMDGRKIYEFTVTWGEERSTDDLEGEATQTSDQRPTEEQIRALLPDYTGVI
NQIPPQFSAIKIAGERAYDLAREGEVVDIPSREVEIHRLTLLRADRDCAFFEVECGKGTY
VRSLARDMGRDLGCYGHISELRRSFVAPFAEDMMVPLEDLVELEKIEDRDERLAALDAFL
FDTGEALMALPQIRISDDQAHRLRMGNPIILRGRDAPVAEPEAVALAGGKLVAIGEIGEG
EFRPKRVFA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacccagaaaacccaagggccgcccggtttccggctggctgatcctcgataag
cccgtggattacggctcgaccgaagccgtcggcaagatcaaatggctgttcaatgcccag
aaggctggtcacgccggaacgctcgatccactggcatccggcatgttgccgattgcgctt
ggcgatgcgaccaagacggttccctatgtcatggatggccgcaagatctacgaattcacc
gtcacctggggcgaagaacgttcgaccgacgatctggaaggtgaggcaacccaaacctcc
gaccagcgcccgaccgaagaacagatccgcgccttgctgccggattataccggggtgatc
aaccagatccccccgcagttttcggccatcaagattgccggtgagcgagcttatgatctg
gcccgtgaaggcgaagtcgtcgatattccctcccgcgaggtggaaatccatcggctgacc
ctgctgagggcggatcgcgactgcgcctttttcgaagtcgaatgcggcaagggcacctat
gtgcgctcgctggcgcgcgatatgggccgggatcttggctgctacggtcatatttcggag
ctgcgacgctctttcgtcgcgccgtttgccgaagatatgatggtgccgctcgaagatctg
gtggaactggaaaagatcgaggatcgtgacgagcggctggcagcccttgatgccttcctg
ttcgataccggcgaggcgctgatggccctgccgcagatccggatcagcgacgatcaggcc
catcggttgcggatgggcaatccgattatcctgcggggccgggatgcgccggtagccgaa
ccggaagcagtggcactggccggtggcaagctggtggcgatcggcgagatcggcgagggc
gagtttcgcccgaagcgggttttcgcctga
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