Agrobacterium vitis VAR03-1: RvVAR031_06310
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Entry
RvVAR031_06310 CDS
T08810
Name
(GenBank) LysR family transcriptional regulator
KO
K03717
LysR family transcriptional regulator, transcriptional activator of nhaA
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
avf03000
]
RvVAR031_06310
Transcription factors [BR:
avf03000
]
Prokaryotic type
Helix-turn-helix
LysR family
RvVAR031_06310
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HTH_1
LysR_substrate
DUF4925
Motif
Other DBs
NCBI-ProteinID:
BCH53021
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Position
1:707888..708772
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AA seq
294 aa
AA seq
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MRDLNFNHLRYFWAVAHESSLTRAAQHMNLSQSALSVQIQKLEHQMGHALFERVGKKLVL
TEAGQIALDYADTVFKAGDELMSTLNGRPTSSRQVLRVGALTTLSRNFQLEFLRPLVGRS
DVELIVRSGNMRDLLAQLEAHAVDVVLANSAAPRDARSMLRNHLLNEQPVSLVGRPRPAG
QNFTFPDDLRTEPLLLPSLDSDIRVAFDRILEMAGIRPIILAEVDDMAMLRLLAREREGL
TLVPPIVVRDELDAGVLIEHCRIPEVIESFYAIIQKRRFPNTMLAELLASGRVL
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgagagatctgaatttcaatcatctccgctatttctgggcggtcgcgcatgaaagcagc
ctgacgcgggccgctcaacacatgaacctgtcgcaatcggcgctctcggttcagatccag
aagctcgaacaccagatggggcatgcgctgtttgagcgcgtcggcaagaagctggtgctg
acagaggccgggcagatcgcgctcgattatgccgatacggtgttcaaggccggtgacgaa
ttgatgagcacgcttaatggccgccccacctccagccgccaggtgttgcgggttggcgcg
ctgacgacactgtcgcgcaactttcagctggaattcctgcgcccgctggtcggtcgttcc
gacgtggaattgatcgtgcggtccggcaatatgcgcgatctcctggcgcaactcgaagcc
catgccgtcgatgtggtgctggcaaacagtgccgccccgcgcgatgcacgctcaatgcta
cgcaatcatctgctgaatgagcaaccggtcagcctggttggccgcccccggcctgctggg
cagaatttcacattccccgacgatctgcgcaccgagccattgctactgcccagcctcgac
agcgatatccgcgtggccttcgaccggattctcgaaatggccggtatacggcccatcatt
ctcgccgaggtggacgatatggcgatgcttcgccttttggcacgcgagcgcgaagggctc
acgctagtgccaccgatcgtcgtacgcgacgaactggatgcgggagtgctcatcgaacac
tgccgcattccggaagtcatcgaaagcttttatgcaatcatccagaaacggcgctttccc
aatacaatgctggccgaactgctggccagcggtagggtgttatga
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