Agrobacterium vitis VAR03-1: RvVAR031_07050
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Entry
RvVAR031_07050 CDS
T08810
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avf03032
]
RvVAR031_07050 (ihfB)
03036 Chromosome and associated proteins [BR:
avf03036
]
RvVAR031_07050 (ihfB)
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_07050 (ihfB)
DNA replication proteins [BR:
avf03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RvVAR031_07050 (ihfB)
Chromosome and associated proteins [BR:
avf03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
RvVAR031_07050 (ihfB)
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
RvVAR031_07050 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_euk_2
HU-CCDC81_bac_2
Regnase_1_C
Motif
Other DBs
NCBI-ProteinID:
BCH53095
LinkDB
All DBs
Position
1:779598..779909
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AA seq
103 aa
AA seq
DB search
MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVELRGFGAFSVKNRPSRT
GRNPRTGDTVFVEEKWVPFFKTGKELRERLNPGMDDEDDGDAD
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaatccgagctggtgcaaatcgttgcggcccgcaatccgcatctttatcaccgc
gacgtggaaaacatcgtcaacgccgttctggatgaaatcaccgatgcgctcgcgtccggc
aatcgtgtcgaattgcgtggtttcggcgctttttcggtgaaaaaccgcccctcgcggacc
ggacgcaatccccgtacgggtgatacggttttcgtcgaagaaaaatgggtgccgtttttc
aagaccggcaaggaattgcgcgagcgcctcaatcccggcatggacgacgaggatgacggc
gacgccgactga
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