Agrobacterium vitis VAR03-1: RvVAR031_07960
Help
Entry
RvVAR031_07960 CDS
T08810
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00061
Fatty acid biosynthesis
avf00071
Fatty acid degradation
avf01100
Metabolic pathways
avf01212
Fatty acid metabolism
avf02024
Quorum sensing
avf04146
Peroxisome
Module
avf_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RvVAR031_07960 (fadD)
00071 Fatty acid degradation
RvVAR031_07960 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RvVAR031_07960 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_07960 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
avf01004
]
RvVAR031_07960 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
avf04147
]
RvVAR031_07960 (fadD)
Enzymes [BR:
avf01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RvVAR031_07960 (fadD)
Lipid biosynthesis proteins [BR:
avf01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RvVAR031_07960 (fadD)
Exosome [BR:
avf04147
]
Exosomal proteins
Exosomal proteins of breast milk
RvVAR031_07960 (fadD)
Exosomal proteins of breast cancer cells
RvVAR031_07960 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
BCH53186
LinkDB
All DBs
Position
1:complement(877226..878926)
Genome browser
AA seq
566 aa
AA seq
DB search
MNTLSGLESNFASRRIWLASYPTSVPAELPPLDHESLPELFDENCKTFASRKAFTSMGRS
MTFQELGEQATKIAAWLQAEGFSKGDRIAVMMPNVLQNPVIVFGILKAGMIVVNVNPLYT
PRELAHQLKDSGAVAIFVLENFAHTVQAVMDKVSLRRVVVTSMGDMLGLKGHLVNFIVRK
VKKLVPAWSIANSRSFASVLAAGGKARLRPETLSGNDIAFLQYTGGTTGVSKGAVLTHGN
LIANTMQMSLWLGSAFDTRPRPETLTFICALPLYHIFALTVNALMGIACGGHNILIANPR
DIPGFAKELSRYDFNIIIGLNTLFNALMNNEAFRKLDFSHLQLTFAGGMSVQRPIADRWH
QITGCPITEGYGLSETSPVATANRMNDKDFSGCIGMPISSTDVDIRDEQGQSLALGEVGE
ICIRGPQVMAGYWQRPEETARAMTEDGFFRTGDMGFMDARGYTKIVDRKKDMILVSGFNV
YPNEIEEVAVMHPGVLEAAAIGVPDPHSGEAVKLFVVRKDPSLTEQQVKDHCAANLTNYK
RPRHVAFLEELPKSNVGKILRKDLRP
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaatactctgtccgggcttgaaagcaatttcgcatctcgccgaatctggcttgcatcc
tatcccacctcggtgcctgcggaacttccgcccctcgatcacgaatcgctgcccgaactc
ttcgatgaaaactgcaagacctttgcctcccgcaaggccttcaccagcatgggccgctcc
atgacctttcaggagcttggcgagcaggcgacgaaaattgccgcatggctgcaagccgaa
gggttcagcaaaggcgaccggatcgctgtgatgatgcccaacgtcttgcaaaatccggtg
attgtgtttggcatcctcaaggccggaatgatcgtcgtcaatgtcaatccgctctatact
ccgcgcgaactggcgcatcagctgaaggattcgggcgcggttgccattttcgtactggag
aattttgcccacacggtgcaggcggtgatggacaaggtgtccctacgccgcgtggtcgtt
accagcatgggcgatatgcttggcctgaagggccatctggtgaatttcatcgttcgcaag
gtgaagaagctcgtgccggcctggtcgatagccaattcccgaagctttgcatcggtgctg
gcagcaggtggaaaagcacggttgcggccagaaactctttccggcaacgatatcgccttt
ctgcaatataccggcggcacgacaggggtttccaagggagcggtgctgacccatggcaac
ctcatcgccaataccatgcagatgtcgctgtggttggggtccgctttcgatacccgccca
agacccgaaacgctgacctttatctgcgctttgccgctctatcatatctttgcgctgacc
gtgaacgccctgatgggcattgcctgcggtggccacaatatcctgatcgccaatccgcgt
gacattccaggcttcgccaaggaattgtcccgctatgatttcaacatcatcatcggcttg
aatacgctgttcaatgccctgatgaacaatgaggccttccgcaagctggacttttcccat
ctgcaactgacctttgccggtggcatgtcggtgcagcggccgattgccgatcggtggcac
cagattaccggctgcccgatcaccgaaggctacggcctgtcggaaacctcgccggtggca
accgccaatcgcatgaacgacaaggacttcagcggctgcatcggcatgcctatttcgtcc
accgatgtcgatatccgtgatgaacagggccaaagcctggctttgggagaggtcggggaa
atctgcattcgcggaccgcaggtcatggcaggctattggcaacggccggaagaaacggca
cgggcgatgactgaggatgggtttttccgcactggcgacatgggcttcatggacgcccgt
ggctataccaagatcgtcgaccgcaagaaggatatgatcctggtctccggcttcaatgtc
taccccaacgagatcgaggaagtcgcggtcatgcatcccggcgtgctggaggccgcggct
atcggtgtgccggacccgcattccggtgaagccgtcaaactgtttgtggtgcgcaaggac
ccgagcttgacggagcagcaggttaaggaccattgcgccgcaaacctgaccaattacaag
cgcccccgccatgtggcctttcttgaagaattgccaaaatccaatgtcggcaagattctg
cgtaaggatctgagaccttaa
DBGET
integrated database retrieval system
