KEGG   Agrobacterium vitis VAR03-1: RvVAR031_08590
Entry
RvVAR031_08590    CDS       T08810                                 
Name
(GenBank) DNA ligase-associated DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
avf  Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:avf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:avf03400]
    RvVAR031_08590
Enzymes [BR:avf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RvVAR031_08590
    5.6.2.6  RNA 3'-5' helicase
     RvVAR031_08590
DNA repair and recombination proteins [BR:avf03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    RvVAR031_08590
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C ResIII Cas3-like_C_2 PSD4
Other DBs
NCBI-ProteinID: BCH53249
LinkDB
Position
1:958134..960641
AA seq 835 aa
MSEPESTLSLLPSSFEHWFAQKGWQPRAHQLELLARAGQGESTLLIAPTGAGKTLAGFLP
SLVDLTRRGRKRPGEAFTGIHTLYISPLKALAVDIERNLVKPVEEMGLPVSIETRTGDTP
QAKRARQKLNPPDILLTTPEQLALLIANGEAPRFFRDLRYVIFDELHSLVTSKRGHLLAL
GLARLRILAPGLQTIGLSATVADPPELQRWLVAQSPGEAALAGLVTVAGGARPNITILNT
QERIPWSGHSARYAIPDIYAVLKQFAMTIIFVNTRSQAEMLFQELWTVNDDSLPIALHHG
SLDVGQRRKVEEAMAANRLRAVVATSTLDLGIDWGEVDLVIHVGAPKGASRLAQRIGRAN
HRMDEPSRAILVPANRFEVMECQAALDANYLGAQDTQSVGEGPLDVLAQHVLGMACAAPF
DADDLYTEVTSAMTYASLSRETFGRIVDFVATGGYALKTYDRYARIRKTAEGRWRISNPA
VAQQYRLNLGTIVEEPMLNVRLVKRNHLGSIGRGGMTLGKVEEYFVEQLAQGDTFLFSGK
VLRFEGLRESECLVSNAFSQDPKIPAYAGGKFPLSTYLADQVRAMLDDPARRASLPDQVR
DWLEIQKVKSVLPKRGDLLVETFPRGKRFYMVLYPFEGRLAHQTLGMLLTRRLERWRAKP
LGFVATDYALAIWGLEDLGWMVSTGKLSLADLFEEDMLGDDLEAWLDSSYMLKRTFRTCA
VIAGLIEKRHPGKEKSGRQVTVSADLIYDVLRAHEPDHILLQATRADAANGLLDIARLGD
MLKRINGHILHKALDHVSPLAVPVMLEIGRETVVGEAQEDVLAEAAEDLIAEAMG
NT seq 2508 nt   +upstreamnt  +downstreamnt
gtgtctgagccggaatccacgctttcccttctgccttcatcctttgagcattggtttgcg
cagaagggatggcagccgcgtgctcatcagttggagttgctggcgcgggccgggcagggg
gaaagcacgcttctgattgccccgaccggggccggcaagacccttgccgggtttctgccc
tcgctggtcgatttgacccggcgcgggcgaaagcggccgggcgaggcctttaccggcatt
cacacgctctatatctcgccgttgaaagcgctggcggtcgatattgagcgcaatctggtc
aagccggtcgaggaaatgggcctgcctgtcagcatcgagacccgtaccggtgatacgcca
caggccaagcgggcgcgccagaagctcaatccgccggatattttgctgaccacgccggaa
cagctggctttgctgatcgccaatggcgaagcgccccgcttcttcagggacctgcgctat
gtgattttcgacgagttgcattcgctcgtcacctccaagcgtggccatcttctggcgctg
gggctggcccggctgcggatcttggcgccgggacttcaaaccatcggcctttctgccacc
gttgccgatccaccggagttgcaacgctggctggttgcgcaaagcccgggggaagcggcc
ttggccgggctggtgacagtggcgggcggggcgaggcccaatatcaccattttgaacacg
caggaacgtattccctggtccggccattcggcccgctacgccattcccgatatctacgcg
gtgctgaaacagtttgcgatgacgatcatcttcgtcaacacccgctcccaggcggaaatg
ctgtttcaggaattgtggactgtcaatgatgacagcctgccgattgccctgcatcacggc
tcgctggatgtcggccagcgccgtaaggtggaagaggcgatggccgccaaccggctgcgt
gccgtggtcgccacctcgacgctggatctcggcatcgactggggtgaggtcgatcttgtc
atccatgtcggcgcacccaagggtgccagccgattggcgcagcggattggccgggccaat
caccgcatggatgagccaagccgggccattctggttcccgccaaccgcttcgaggtgatg
gaatgccaggcggcgctggatgccaactatctcggtgcgcaggacactcaatcggtgggt
gaggggccgctggatgtgctggcccagcatgtgttgggcatggcctgtgccgcacctttt
gatgcggacgatctttatactgaagtaacgtcagccatgacttacgcttctttgtcgcgt
gaaacgttcgggcggattgtcgatttcgtcgccaccggtggctatgcgctgaagacctat
gaccgctatgcccgcatccgcaagacggcagaaggacgttggcggatttccaatccggcg
gtggcgcagcaatacaggctcaatctcggcactattgtcgaggagccgatgctgaatgtc
cggctggtcaagcgtaatcaccttggctccatcgggcgaggcggcatgacccttggcaag
gtcgaggaatatttcgtcgagcaactggcgcaaggcgatacattcctgttttccggcaag
gtcttgcggtttgaaggcctgcgcgaaagcgaatgcctggtgtcgaatgctttttcgcag
gacccgaaaattccggcctatgcgggcgggaaatttccgctctcgacctatcttgccgat
caggtgcgggccatgctggacgatcccgcccgccgcgccagcctgccggatcaggtgcgt
gactggctggaaatccagaaagtcaaatccgtactgccgaagcggggcgacctgctggtt
gagacttttccacgcggcaagcgcttctacatggtgctttatccgtttgaggggcggctg
gcccatcagacgctgggcatgctgctgacgcggcggctggaacggtggcgggccaagccg
cttggctttgtggcaacggattacgccctggcgatctgggggctggaggatctcggctgg
atggtgtccacgggcaagctttcgctggctgacctgttcgaggaagacatgctgggcgac
gatctggaggcctggctggactcctcctacatgctgaagcgtaccttccgcacctgtgcg
gtgattgccgggttgattgaaaagcgccatcccggcaaggaaaaatccggcaggcaagtg
acggtttccgcggacctgatctatgatgtgctgcgcgcccatgagcctgaccatatcctg
ttacaggcaacccgggccgatgcggcaaacggtcttttggacattgcccggcttggcgat
atgctaaagcgaatcaacggccatattctccacaaggcgctggaccatgtctcgccgctg
gccgtgccggtcatgctggagatcggtcgggaaacagtggtcggcgaagcccaggaagat
gtgctggcggaagcggcggaagatctcatcgccgaagcgatgggataa

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