Agrobacterium vitis VAR03-1: RvVAR031_10540
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Entry
RvVAR031_10540 CDS
T08810
Name
(GenBank) RNA-binding protein
KO
K06959
protein Tex
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
RvVAR031_10540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_central_region
Tex_YqgF
HHH_3
Tex_N
HHH_9
S1
HHH_7
YqgF
S1_RRP5
T2SSK
HHH_6
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BCH53444
LinkDB
All DBs
Position
1:1170597..1172909
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AA seq
770 aa
AA seq
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MADDIKSIAALIASEINARADQVISAVDLLDGGATVPFIARYRKEVTGGLDDTQLRNLAE
RLTYLRELGARRKAIVDSISSQDKMTDELAIKIARTTTKAELEDIYLPYKPKRRTRAEIA
REKGLEPLANAIWEDRSSDPAKLAEAYVKGEVADVKAALEGARDIVAEAMAENADLLKSL
RNYLKDKAILYSKVQDGKQASGEKFADYFEHFERWATVPGHRALAMLRGWNEEILTLTIE
ADKDDTSAIKPTHRMIASAYQIGQKGPADQWLMEVAGWTWRVKLSMSLSLDLMRDLRERA
EEEAIHVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAVVDGTGKVLETTTVYPFPPK
NDIRGTQAELAGLIRKHGVDLISIGNGTGSRETEKLVADMLAQLPATGKKPTKVIVSEAG
ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVDQGRL
GRSLDAVVEDAVNAVGVDLNTASAPLLARVSGLGGSIAEAIVAHRDQTGPFSSRKDLLKV
ARLGARTFEQCAGFLRIPDGKEPLDASSVHPEAYGVAKKIVAACGRDLRTLMGDSSLLKG
LDPRQFVDEQFGLPTVKDILAELEKPGRDPRPSFKTATFADGVEEITDLKPGMLLEGTVT
NVAAFGAFVDIGVHQDGLVHVSQLADKFVKDPHEVVKAGDVVKVRVVEVDVKRKRIALTM
RKEGGEAPPPSARDNRGPAVMRNANPKPARDEKPAMGGLGAALAEAMRKK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgatatcaaatccattgccgcgctgattgccagcgagatcaatgcccgagcc
gatcaggtgatctccgcggtggatttgctggatggtggcgccacggttcccttcatcgcc
cgctaccgcaaggaagtcaccggcggacttgatgatacgcaattgcgcaatctggccgag
cgcctaacataccttcgtgaacttggcgcgcgccgcaaggcgattgtcgacagcatctca
tcgcaagataagatgaccgatgaactggccatcaagattgcccgcaccaccaccaaggcg
gagctggaagatatctatctgccctataagcccaagcgccgcacccgtgcagaaatcgcc
cgcgaaaaaggcctggagccgctggccaacgcgatttgggaagaccgcagcagcgatccg
gccaagctggcagaagcctatgtgaagggcgaagtggccgacgtcaaagcggctctggaa
ggcgcgcgcgatatcgttgccgaagccatggcggaaaatgccgacctgttgaaaagcctg
cgtaattacctgaaggacaaggcgatcctctattccaaagtacaggatggcaaacaggcg
tctggcgagaaatttgccgattattttgaacatttcgagcgctgggccacggtgccgggc
caccgggcgctcgccatgctgcgcggctggaatgaagagattctgacgctgaccattgag
gcggacaaggacgataccagcgctatcaagccaactcatcgcatgatcgcgtccgcctat
cagattggccagaaaggccccgccgatcaatggcttatggaggtggcgggctggacctgg
cgcgtcaaactgtccatgtcgctgtcactggacctgatgcgcgacctgcgggagcgggcc
gaggaagaggccattcacgtttttgcccgcaatctcaaggatttgctgttggcagcgcct
gccggttcgcgccccaccatggggcttgatccgggtattcgcaccggcgtcaaagtcgct
gtggtcgatggcaccggcaaggtgctggagaccacaacggtctatcctttcccgccgaaa
aacgacattcgcggcacgcaggccgagctggcgggcctgatccgcaagcacggcgtcgat
ctgatctctatcggcaatggcactggcagccgcgagacggaaaagctggtggccgatatg
ctggcgcaattgcctgcgaccggcaagaaacctaccaaggtcatcgtttcggaagcaggc
gcctcggtctattcggcgtcggaactggcggccaaggaattccccaatctggatgtgtcc
ttgcgcggggcggtgtccattgcccgccgtttgcaggatccattggcggaactggtgaag
atcgatccgaaatccatcggcgttggtcagtatcagcatgatgtcgatcagggccgtcta
ggccgttcgctggatgccgtagtcgaagatgcggtgaatgcggtcggcgttgatctcaac
accgcatccgctccgctcctggcgcgggtgtcgggtttgggcggatcgattgccgaagca
atcgttgcacatcgtgaccagaccggtccgttttccagtcgcaaggatctgttgaaagtg
gcgcggcttggtgcacgcaccttcgagcaatgcgccggatttctgcgcattcccgatggc
aaggagccgctggatgcttcgtctgttcacccggaagcctatggcgttgccaagaagatt
gttgcggcctgcgggcgcgatctgcgcaccctgatgggcgatagcagcctgttgaaaggg
ctggacccgcgccagttcgttgatgagcagtttggtctgcccacggtgaaggacattctg
gccgagctggaaaagccgggccgtgacccgcgcccgagttttaagactgccacctttgct
gatggtgtggaagaaatcaccgacctgaagcccggcatgttgctggaaggcacagtcacc
aatgtcgcggccttcggagcctttgtcgatatcggcgtgcatcaggatgggttggtgcat
gtctcgcaattggccgacaagttcgtcaaagacccccatgaggtggtcaaggccggtgat
gtggtgaaagtccgggtggtggaagtggatgtgaagcgcaagcgcattgcgctgaccatg
cgcaaggaaggtggagaggcgccgccgccatcggcgcgcgataatcgtggcccggcggtg
atgcgcaatgccaacccgaaaccggcccgtgatgaaaagccggcgatgggtggcctgggg
gcggccctggccgaggcgatgcgcaagaaataa
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