Agrobacterium vitis VAR03-1: RvVAR031_10870
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Entry
RvVAR031_10870 CDS
T08810
Symbol
xseB
Name
(GenBank) exodeoxyribonuclease 7 small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RvVAR031_10870 (xseB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_10870 (xseB)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
RvVAR031_10870 (xseB)
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RvVAR031_10870 (xseB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
Motif
Other DBs
NCBI-ProteinID:
BCH53477
LinkDB
All DBs
Position
1:complement(1212077..1212328)
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AA seq
83 aa
AA seq
DB search
MTDVAATDIATYSFEKAVAELESIVARLERGDVALDESISIYERGELLKKHCEALLSAAE
NRIEKIRLDRAGKPVGAEPLDKE
NT seq
252 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgttgccgccaccgatattgccacttattccttcgagaaagccgtggccgag
ctggaaagcatcgtggcccggttggagcgcggcgatgtggcgctcgacgaatccatctcg
atttacgagcgcggcgagttgcttaagaaacattgcgaggcgctgctgtcggcggctgaa
aaccgcatcgagaaaatccggctggaccgcgctggcaagcctgttggtgccgagccgctg
gacaaggaatag
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