Agrobacterium vitis VAR03-1: RvVAR031_12380
Help
Entry
RvVAR031_12380 CDS
T08810
Name
(GenBank) ATP-binding protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
avf
Agrobacterium vitis VAR03-1
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avf03400
]
RvVAR031_12380
DNA repair and recombination proteins [BR:
avf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
RvVAR031_12380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HerA_C
DUF87
AAA_22
FtsK_SpoIIIE
ResIII
AAA_30
AAA_10
TrwB_AAD_bind
T2SSE
AAA_16
nSTAND3
Hydrolase
DUF5852
AAA_28
AAA_7
AAA_18
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCH53628
LinkDB
All DBs
Position
1:1371594..1373177
Genome browser
AA seq
527 aa
AA seq
DB search
MLEDGKLFLGASRKPDDAFNAPEYLDLKLANRHGLITGATGTGKTVTLQILAEGFASAGV
PVFCADIKGDLSGIAAPGEAKDFLIKRAEEIGLSPYPFAEFPVTFWDLYGEKGHRVRTTI
AEMGPLLLARLMEASEAQEGVLNIAFKIADKGGLALLDLKDLQALLTYMAENSSELSGQF
GLVSKSSVGSLQRALLLLESQGADQFFGEPALSIQDIMRVAPDGRGTISVLAADRLMMNP
RLYATFLLWLLSELFEELPEVGDLAQPKLVFFFDEAHLLFRDAPSVLVERVEQVVRLIRS
KGVGVYFVTQNPLDVPETILAQLGNRVQHALRAYTPREQKAVKTAAETFRPNPAFSCEEA
ITALGTGEALVSTLQGKGVPSMVERTLIRPPSARIGPLTDSERATIIGASPMANLYDRTI
DRHSAFEILAERAEKAAGRIGADDRADDGAEDSSAASRWKLPGFGDEAPEQKTTTTRQAP
DRTAPPGRQRQTVIEAAMKSAARSLASQVANQLGRALVRGILGSLKR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaagatggaaaattgtttctcggtgccagccgcaagccggatgatgcgttcaac
gcacctgaatatctggatctgaaactggccaaccggcatggcctgatcaccggtgctacc
gggaccggcaagaccgtgacgctgcaaatcctggcggaaggtttcgctagtgcgggcgta
ccggtgttctgcgccgacatcaagggtgatctgtcgggcatcgccgcgccgggggaggcc
aaggatttcctgatcaagcgcgcggaggagatcgggctttcaccctatcccttcgcggaa
tttccggtcaccttctgggatctctacggcgaaaagggtcatagggtccgcaccaccatc
gccgaaatggggccgcttctgctggcccggctgatggaggcctcggaagcccaggagggc
gtgctgaacattgccttcaaaatcgccgataagggtgggctggcgctgctggatctcaag
gatttgcaggcgctgctgacctatatggcggaaaattccagtgaactatcgggccaattc
gggctggtgtcgaagtcctcggtcggctcgctgcaacgggcgctgctgctgctggaaagc
cagggcgctgatcagttctttggcgaaccggcgctgtctatccaggatatcatgcgggtc
gcgccggatgggcgcgggacgatttcggtgctggccgccgaccggctgatgatgaaccca
cggctttatgccactttcctgctctggctgctgtcggaactgttcgaggaactgcctgag
gttggcgatctggcgcagcccaaactggtgttcttcttcgatgaggcgcatctgctgttt
cgcgatgcgccaagcgttcttgttgagcgggtggagcaggtggtgcggttgatccgctcc
aaaggcgtcggcgtttattttgtcacgcaaaatccgctggatgtgccggaaaccattctg
gcgcaattgggcaaccgggtgcagcacgccctgcgcgcctatacgccccgcgaacagaag
gcggtgaagaccgccgccgaaaccttccggcccaatccggccttttcctgcgaagaggcg
attacggcacttggcaccggtgaagccctggtctcgacccttcagggcaagggcgtaccc
tcgatggtcgagcgcaccctgatccgcccgccctccgcccgcattggcccgctgaccgac
agcgaacgggcgacaatcatcggcgccagccccatggcgaacctctatgatcgcaccatc
gaccggcactcggccttcgaaatcctggcggaacgggccgaaaaagccgctggacgcatc
ggggccgacgatagagccgatgacggcgccgaggacagcagcgccgccagccgctggaaa
cttccgggctttggcgatgaagcaccagagcaaaaaaccaccaccacccgccaagcgcct
gaccgcaccgcaccccccggccgccaacgccaaacggtgatcgaggcagcgatgaaaagc
gccgcccgctcactcgccagccaggtcgccaaccagctcggccgggcgctggtgcggggg
attttggggagtttgaagcggtag
DBGET
integrated database retrieval system
