Agrobacterium vitis VAR03-1: RvVAR031_13810
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Entry
RvVAR031_13810 CDS
T08810
Symbol
oppD
Name
(GenBank) peptide ABC transporter ATP-binding protein
KO
K10823
oligopeptide transport system ATP-binding protein
K15583
oligopeptide transport system ATP-binding protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf01501
beta-Lactam resistance
avf02010
ABC transporters
avf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RvVAR031_13810 (oppD)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RvVAR031_13810 (oppD)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RvVAR031_13810 (oppD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_13810 (oppD)
Transporters [BR:
avf02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Oligopeptide transporter
RvVAR031_13810 (oppD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
AAA_21
oligo_HPY
AAA_22
AAA_29
AAA_16
nSTAND3
nSTAND1
NACHT
AAA_13
DUF87
RsgA_GTPase
AAA_23
MMR_HSR1
ATP-synt_ab
FtsK_SpoIIIE
ABC_ATPase
PRK
SbcC_Walker_B
AAA_15
AAA_19
AAA_33
MobB
AAA
AAA_18
APS_kinase
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
BCH53771
LinkDB
All DBs
Position
1:complement(1523499..1525103)
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AA seq
534 aa
AA seq
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MDKTENQTVLTVKDLKVTFTTPDGEVNAVKGISFDVKKGETLAIVGESGSGKSQTMMGIM
GLLASNGQVAGSARYGETELAGASLSTLNDVRGSKITMIFQEPMTSLDPLYTVGKQISEP
LIFHRRMSRSKARARVLELLKLVGIPEPERRIDSYPHELSGGQRQRVMIAMALANEPDLL
IADEPTTALDVTIQAQILDLLADLQKRFGMAIVLITHDLGVVKHVADRVAVMRRGEIVEQ
GSRDDIFERPQADYTKMLLAAEPSGSKVAPPSDAPVILEGRNVVVDFNISSGILFKGNRK
FRAVDHVNLKLRQGQTIGIVGESGSGKSTLGRALLKLLSADGRFSFETTDISGLDRAGMR
PFRRQLQLVFQDPYGSLSPRQTVGEIITEGLYVHEPNLNKAERDKRAIAALKEVGLDPAS
RNRYPHEFSGGQRQRIAIARSMILKPKVVILDEPTSALDRSVQRQVIELLRDLQQKHDLS
YVFISHDLSVIKAISDHVIVMKNGKIVEEGPTEDIFESPAEDYTKALIAAAFTH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaccgaaaaccagacggtgctgaccgtcaaggacctgaaggtcaccttcacc
acgcccgatggcgaggtgaatgccgtcaagggcatctccttcgatgtcaagaaaggtgag
acgctggccatcgtcggtgaatccggctcgggcaaaagccagacgatgatgggcattatg
ggactactggcctccaacggccaagtcgcaggctcggcccgctacggcgaaacggaactg
gcaggtgccagcctctcgacgctgaatgacgtgcgcggctcgaagatcaccatgatcttt
caggaaccgatgacctcgctcgatccgctctacacggtcggcaagcagatttccgagccg
ttgatttttcaccgccgcatgagccggtcgaaggcgcgcgcccgtgtgctggaactgctc
aagctggtcggcatcccggaaccggagcggcggatcgacagctatccgcatgaattgtcc
ggtggccagcgccagcgcgtgatgatcgccatggcgctcgccaacgagccggacctgctg
attgccgacgagccaaccacggcgctggacgtaacgatccaggcgcaaatcctcgatctt
ctcgccgatctgcaaaaacgcttcggcatggccatcgtgctgatcacccacgatctcggt
gtggtcaagcatgtggccgaccgggtggcggtgatgcggcgcggcgaaattgtcgaacag
ggcagccgcgacgatatttttgaacgcccccaggctgattacaccaagatgctgctggcc
gccgaaccctctggttccaaggtggcaccgccctccgatgcgcctgtcattctcgaaggc
cgcaatgtcgtggtggatttcaacatcagctccggcatcctgttcaagggcaatcgaaag
ttccgcgccgtcgatcatgtcaatctgaagcttcgccaaggccagaccatcggcatcgtc
ggtgagtccggttcgggcaaatcaacgttgggtcgggcgctgctgaagctgctttccgcc
gatggccggttcagctttgaaacaacagacatttccggccttgaccgtgccgggatgcgt
cccttccgccgtcaattgcagctggtgtttcaggacccctacggctcgctctcgccgcgc
cagacggtcggcgagatcatcaccgaagggctttatgtgcatgaaccgaaccttaacaaa
gcggagcgcgacaagcgcgccattgccgccttgaaggaagttggcctcgatccggcctcg
cgcaatcgctatccgcacgagttttccggcggccagcgtcagcgtatcgccatcgcccgc
tcgatgatcctcaagccgaaagtggtgatcctcgatgagccgacctcggcgctggaccgt
tccgtgcagcggcaggtgatcgagttgctacgcgacttgcaacagaaacatgatctttcc
tacgtgttcatcagccacgatctgtcggtgatcaaggcgatttccgaccatgtgatcgtg
atgaagaacggcaagatcgttgaggaagggccgacggaagacattttcgaaagcccggct
gaagactataccaaggccctgattgccgctgcgtttacgcattaa
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