Agrobacterium vitis VAR03-1: RvVAR031_14460
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Entry
RvVAR031_14460 CDS
T08810
Symbol
pglA
Name
(GenBank) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf00040
Pentose and glucuronate interconversions
avf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RvVAR031_14460 (pglA)
Enzymes [BR:
avf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
RvVAR031_14460 (pglA)
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GFIT
Motif
Pfam:
Glyco_hydro_28
SH3_KIN17_C
DUF3515
Motif
Other DBs
NCBI-ProteinID:
BCH53836
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Position
1:1589419..1591002
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AA seq
527 aa
AA seq
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MLGAVAFCALAPVAVSAAEPAVATQWGSVTAPEAPSNLCATLTAGLTAKDGSLDHADADG
KAPHPDQMRLQAAIDGCAGGAVKLVPGAEGQDAFLSGPLSLKSGVVLWIDKGVTLFASRD
PKDYDSGAGDCGTANTSSAKTCKPLIAAKDTKGSGIVGEGKIDGRGGSLLLSGDNAGKRS
WWDVAWQSKQGLIQHVFRLVEIDGGEDFTLHRITLLNSPNFHVASNGVTGLTAWGIKILS
PSAVYTRPDYACPPETTPDKLTPATCFTPDTVKNTDGFDPGQSSKVVLAYSAISTGDDHV
AIKAGGDKPSTRMTFAHNRFYYGHGMSVGSETDAGVDGIHVYDLVMDGHDSPNGNGLRIK
SDTSRGGKVTNVLYEDVCMRNVAFPLVFDTRYSDKTGDRIPDFSGITVRNLRYTGSTTGS
GGHVVLRGIKDDAHYQPLGLFLDTIQFDGPQPLLVGSADPAAKDPPLNAHVTIGPGPVSF
ADLLKADPARRVKTVNLVDTSEEDPVPPLDCSSAFVPLASFLEGAPF
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcttggcgcggttgccttttgcgccctggcaccggttgcggtttcggcggcggagcca
gctgtagccacccaatgggggtcggtgaccgcgcctgaggctccctccaacctctgcgcg
acattgacggctggcctgacggccaaggatggttccctcgatcatgccgacgccgatggc
aaggctccccatccagaccagatgcgcttgcaggctgccattgacggctgcgcgggtggt
gccgtcaagctcgtccccggggctgaggggcaggatgcgtttttgagtggtccgctgagc
ttgaagagcggggtcgtgctgtggatcgacaagggtgtgacgctgtttgcctcccgcgat
cccaaagattacgacagtggtgctggtgattgcggtacggccaatacctcatccgccaag
acctgcaagccgctgattgcggccaaggacaccaaaggcagcggcatcgttggcgaagga
aagatcgatgggcgcggcggttcgctgctgttgtcgggcgacaatgctggcaagcgatcc
tggtgggatgtggcgtggcaatccaagcagggattgatccagcatgtgttccggctggtg
gaaatcgatggcggcgaggattttactctgcaccggatcacgctgttgaacagcccgaac
tttcatgtggcgagcaatggtgtgacgggcctgactgcctgggggatcaaaatcctcagc
cccagtgccgtctatacccgcccggattatgcctgcccgccggagaccacgcctgacaaa
ctgacgcccgccacctgtttcacgcccgatacggtcaagaataccgatgggttcgatccg
ggccagtcctcaaaagtcgtgctcgcctacagcgccatcagcactggcgacgatcatgtg
gcgatcaaggcgggcggcgacaagccttcgacgcggatgacctttgcccataaccggttc
tattacggccacgggatgtctgtcggctccgagaccgatgcgggcgtggacggtatccat
gtctacgatctggtgatggatggtcatgacagcccgaacggcaatggcctgcggataaaa
tcggacacatcgcggggcggcaaggtcaccaatgtgctgtatgaagatgtctgcatgcgc
aatgtcgccttccccttggtcttcgatacccgctactcggacaaaaccggcgaccgcatc
ccggatttttccggcatcacggtgcgcaacctgcgctacacaggcagtacgaccggtagc
ggtggtcatgtggttttgcgtggtatcaaggacgatgcgcattatcagccgctcggcctt
ttccttgataccattcagtttgacggcccccagccgcttctggtcggctccgccgatccg
gcggcaaaagatccgccactcaatgcccatgtcacgatagggcccggcccggtcagcttt
gccgacctgttgaaggcagatccggcccgccgggtgaaaactgtcaatctcgtggatacc
agtgaagaagatccggttccgcctctcgattgttcgtcggccttcgtgccactcgcgagc
tttttggagggtgcaccgttttga
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